RNA id: TU212774



Basic Information


Item Value
RNA id TU212774
length 678
lncRNA type read_through
GC content 0.44
exon number 4
gene id G156916
representative False

Chromosome Information


Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 7836755 ~ 7938030 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


GCCTCTTCTATCCTACAGACTCGTCTGATGAAGTAGCTGGAGATCTGACTGCAGTTCAGCCTGCAGGTTCCTGGATCCTGATGGCTACTGCTACTCTGATCAACCTGGGCACTTCTTAAGGATTTCTGGGACATGTAGTCCACTGCTTGCATTTCTTTCTTATCTGAGAAAATCCCATCTGCCAAGGGATTCGGGCACTCGGGTCTTCTGCCCTGTTCTAGTAGACGCTATGTTGTGGCCTCCTGCCTTATGGATAGGATGGACACCTCACAGAGTCTCTGGTCAAGGTTCAGCGGACCTGCAGTGGACAGCGCCAGGTCTACTCTGACCTGCCACTGAAGCACCAGACTCTAGAAGCAACCAAACTCTCAACAAAAACAAAGCCGACAAAGAACTTCCTTCCCCCATCCATTTCCCCTTTCCCTTTTGGTCGGCTTCTGGTTGTCTGTTGCTTGGTTGGCAGGTTCTGGGGATGGCCTGCTGGAAAACATTTAACAACCCTTTGTAGGAGTGTGTTATTTCAAACGGAAATATTTCTTTTGGAAATATTTCCGTTTGTATTAACCCTCACTTGCAGTTCTTTTTAAGGCTGTGTgcaattttccaaaaaaaaagtttttaaacaaaaaaaatctaataaaaatagcaaaactaTTTGAACTAAaaaaaaaaagaaaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU212769 lncRNA upstream 203 7836755 ~ 7841481 (+) True G156916
XR_001518591.2 lncRNA upstream 2051 7838726 ~ 7839633 (+) True LOC107197497
TU212771 lncRNA upstream 3912 7836755 ~ 7837772 (+) False G156916
TU212683 lncRNA upstream 86020 7752203 ~ 7755664 (+) True G156856
TU212684 lncRNA upstream 86020 7752332 ~ 7755664 (+) False G156856
TU212909 lncRNA downstream 418188 8356218 ~ 8357077 (+) True G157019
TU212912 lncRNA downstream 423490 8361520 ~ 8361750 (+) True G157022
TU212918 lncRNA downstream 494584 8432614 ~ 8438269 (+) True G157027
TU212945 lncRNA downstream 628399 8566429 ~ 8567668 (+) True G157052
TU212947 lncRNA downstream 630214 8568244 ~ 8568463 (+) True G157054
XM_007244089.3 mRNA upstream 5958 7830102 ~ 7835726 (+) True LOC103033491
XM_022679547.1 mRNA upstream 13122 7824010 ~ 7828562 (+) True LOC107197496
XM_007244092.3 mRNA upstream 43675 7783636 ~ 7798009 (+) True LOC103034665
XM_022679545.1 mRNA upstream 71381 7755742 ~ 7770303 (+) True terb1
XM_007244081.3 mRNA upstream 114734 7720499 ~ 7726950 (+) True LOC103030643
XM_022679551.1 mRNA downstream 353132 8291162 ~ 8301780 (+) True LOC103028908
XM_007233848.3 mRNA downstream 485636 8423666 ~ 8432053 (+) True arsa
XM_007233845.3 mRNA downstream 528843 8466873 ~ 8474471 (+) True pgc
XM_022679552.1 mRNA downstream 556810 8494840 ~ 8507495 (+) True chkb
XM_007233841.3 mRNA downstream 556811 8494841 ~ 8507495 (+) False chkb
TU212659 other upstream 235016 7600567 ~ 7606668 (+) True G156840
TU212485 other upstream 410116 7372376 ~ 7431568 (+) False LOC111194759
TU212490 other upstream 437128 7387502 ~ 7404556 (+) False LOC111194759
TU211750 other upstream 2684284 5157154 ~ 5157400 (+) True G156188
TU211262 other upstream 5086572 2738361 ~ 2755112 (+) True G155776
TU212948 other downstream 631900 8569930 ~ 8570877 (+) True G157055
TU213377 other downstream 2002799 9940829 ~ 9941805 (+) True G157383
TU213920 other downstream 4424421 12362451 ~ 12366770 (+) False LOC103031933
TU214078 other downstream 4797602 12735632 ~ 12740999 (+) False hsbp1
TU214177 other downstream 5795915 13733945 ~ 13736102 (+) True LOC107197649

Expression Profile