RNA id: TU212918


Basic Information

Item Value
RNA id TU212918
length 4874
lncRNA type inter_gene
GC content 0.38
exon number 3
gene id G157027
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 8432614 ~ 8438269 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttttttttttgttgtttttttatttttggtttttacAAGTTTCATTTTTAAAGATACAAGATAGATAGTTTGTCATACTGCTGCTGTTGGTCTTGGTATACAGTGAGGGACTGCATTATGTACTTGAAGTCCAGaggttttgtatttattgtattccttCATCTACCCAAGCTGTATGTGGTCCAGGAGTTTATGAGCTGTTCTGCCACGATAATACAGAAGGGTACAGTTTTTAATGGCCAATAGAGGAGTGTAAAATGCTAGAGTGCTAGAATGCTAAAACGCGGACAAAACGTGTCGAGGGATTCGTTTTTGTCTCTGGACGACGTTTATGACGTGATGCCTGAATGGAAAACAGCAGAATATTGGAAATGTGGGATCCTGATGAGAATCCTGAACCTGAAGAATCTGAACTGCCTGTGCTCACCTCATTGATGAGCCAGATGAGCTGATTGGACGGATAGCGGTATGGATGGGACAGGTAGCATTAAATGTGAATGACTGCGTGGCACATGGactggtgggtgtgtgtgtgtttgtatggatGACAGTAtaacacagctgattcacaggcATGTGTCTTAGCACTCACATGTTACTCAGCACACTGTGACAACACAGCCAACCACAGATGTACAGCGAATTTGTTTGTCGAAGCGcttggaaagaaaaaaataatatacaaatgTATCTATAATTTCAATCAATttacaattttgtgttttacccCCATTTTGCGGTTGCCTTTTCATCGTGGTGAATTATCATCGTAAccgttattattgttatttctttttaaatttacatatttatttcaataaCATACTCAACAGAAAGGACACGGCATGGTCATCTCAACTCTAGAGTATTTACAGCAACCTAGCTGACAGCAAATCACATCAAAAAGTCATAAAACTCGCAGCCCTCCCCTACATGTATCATCAGCACGAATGAACACGCAACGATGGAATCGGATTGCAGGGGCAGTCAGGTAGGTAGTCAGGTGACTGGGGTGAGCGGGACGGGAGCGGCCTCAAGTGTTTTCATCTACAGCTGTGATGGATTTAGTCCAGCCTAAGAGATACTAGTTTACATAGTTATTGGGATAATGAAGCCAGTCTGCTGTATGCTGGGATCCAAGTAAATAGCGAACAACAGGGAAATGCCAAGCTGTAGCACACTGAGAAGCACATATTTGAGAAGCATTTATGTCCatgtatattgattttttttatatttatgaccATCCTGGTGAGTGATTGAAGACCTCTTACCTgcacattttaagtgttttctgcTATAACCTCCCACCACCACTACTGTCAACTCAGGACTCAGGATCTCTATTTTCCCACAATGCATTGTGAAAAGGAAAGGGAAAAGCTACTCACTCAAGTGCAGCttataacttacagtaacaTATTTTGGCATAGCATCGCTTGATGACTTTCCGTAAGTACAAAACAAACAGGAGTTAGtatgttaatattttgtgtactaaCCTGCCCAACCTGCACTATAAAGACTggaaaatagtattaaaaaaattggTGGATGCAaacaattaggggtgtgccatatcgtatcgtacgcaataatatcgccaacatttttgaatatcgtatattatatctgcccagtatgatttattttacttaatcctggatatatatgaagatatatggagtgcattattatcatGGATCTCTGTATCATCATGTATCATGGAATTCTGAATCATTGAATTGTGTTACAAATCTAATAttaatttttcatatatatatcaATTAGGGGAGTGCCATATCATGTCATATgctataataaaatttaattttcattttgtttcagtAGTGCATTcttgaaatcttttttttttaattcagtgttttgtcatatcgccaagaatattgttctcgtgaaaataccatgaaatatcgtgatattattttagagccataatGCCCACCCCTACAAACAATGCAAGTGCTGCAGCAGCAACGGCAGTTCAAGAACCTAGAGTGACATATTTTGGCATAGCATTGCTTTATCACTTTGTGTTCATGGCAAACCAGCACTATTAAGATTAGCATAGTTTTAGTAAGTGATTCATTCACATATCATCAGTTAAAATTGTGTGATTGGTAACTCATTTATTTCCACAAACAGTATTTGGTGATTTGATGAAATTAATGTCAGATATTAACTGTAAATTAACAGATATGTTATTTGTTTTCGCTGTCTGGgtcgaccagaggaggatgggttcctccTACTGGTCTTACtgggttccttccaaggtttcttcctcctagTATGTGCCAATGTTGGCACTATCACTGTGGTGCTTATTTACTCATAAGAGGCTTGGACCTGTAtctttgtaaagctgctttgtgacaacatatacataaataaataatatgttaaataatatattatatataaataaatacaaaatgaatttgaattgaattgtaaAACCTGTATCAGACCAGTAGGGGGCTCCCTTCTCTGAGAAAAATGatgactgtgtgtttgtgtgtggtggagTGATATTCGAGTCAAGGTTAGGGCAAGGACTAGAGATAACACCATAACgaacagaaaaacacatactgtgtctgtctgtctgatcaGACTGATAAGGAGGAATGGAAAGCACTGCTATTGTACTGCGCATATTAATCAGATATAGAGAGATATCCAGTAGAGTAgcccatttggtggaatatgtTCTCCGTAGTGGgctattatgttttatattgcaTTATAATAGCAGGTTCCATCAACCGGTTACAATTGCTCACTGGCACTGTTGGACGGAATGTGAAAAATCCATCATAAAGCACTATATTCAAGTCTTTTATACCTTTTTATACCTTTATACCTGCTGTTGTGACCTACTATTCCTGTGATCAGCACAATGAATATGCACTGTAGAACTAATATAAGCTAGAAAATGTGTGGTTTCATTCCGAATGGATGTTAAAAATTCACTCAAAATTTGTAAGGGTCTATTTAGTATTTACTCCATTATTTTAGTCTGATGGTAAACTTGCAATGTTGGACGTTGTGGCCTAGCATCCCTGTGGTCCGCACAATGAATATGTGTGACATACCTGTATGTATAAGCTGTATAACTAATATAAGctgtaaaatgttttctttttgtctgtatTGACATTAAGAACAATTTGCTTGGCGATAGCATGGCCTTAATTATACAAAAATTAGAGTTTACTATTCCTTTAATTTAGTCTGATGGTAAACTTGGCCTTTGCTGTTTGCTGCACAGGCACTGTTGGACAGAGtgtgaaaaaatgaataatatgaatatatattataaacaaaaatgactatttttttttttcaattttaataaTTCTGATGCATACCTGCTGTTGTGGCCTTCTTGTATTCTTGTGATCAGCTCAATGaatatgtgtgacatactgtatcTAATCTAATATAGCTGACAAATGTTTGTTTCCATTCTGAACTGATGTAAACCTAgtagatgttgtagatgttttGCTGTTTGCGGTTTGTGAAATGATCTGTCGGATGAACGCTGCACCCCTCTGGCTACTTACACACAAAACATCTCTACCTGTTAGCCTTCAATGCATGGAGCGAGGATGGGGCCTAAGCAACTCAGCAGCATTAAGCACTGAAGCACAGCCTGAGAATTAGCCTACCGAAGCTTTAGCCGAGATTTTCAGTTTAGTACAGTTTAGTATCTACAGAACCGTGCACGGCCGATGCTACCTGGCTCTCCATTCTCAGGCTAACACACAGGCCTTCCTGGTCACCTGCAATCCTCTCCACGCTCCCGTTCGCTGATGGAGGGTGCTACTTACATACAGTAATGTAACGAAGCGTCCGTAGTAGTCACCTACTGTctctaaatatacagtatttacaccaTGGTAGAGTAAGAATGCACACTGAACCTTCCACTACAGCGAGCAGGCAGTCATGAAATGACTAAATCCCTGTTCAGTACAGACGCCCTTCCAGTTGTCCGTTTCAGTACAAACCTAATTCAGCGTATTTCAGAGTCAAACGAATACATATTTACAAACGAAACCCGTCCTTCTAAAACAAACGTCAAACTCATGACTTATCGTTTTACGTATTTCCtgtatgtgtaatatgtgtgtattCTGTGAGCATAACCCTCAAAGCCATGCATtaaaacatgtgaagtcataTTTTGTCATTTCTAAACTTCTGGAGAaggaaagaaatagagaaaaaaattataaaaaaaaaagaaacgcatTGGTAGTATCTCAACCAAGCCATGTCCCTAGGACCTACATCATACAAAAGTTAAAGAAACAGGCAATCCATTTCAAGGATGTAGAATCAATAAAAcaagagtaaagaaaaaaacaaacaaggaatTAAATAAACGGACGCATCACTAAGGTCGAGCCTACGTGTTCTGCTCAGTTCAtgtagagacagacagacagagagatagatagatagatagatagagaaatagagggatagagaaagacagggagagagagaaaaggagagagagaatagtcGAGGCCTATGTTACATCCAGTAAAGGCCACCAGTCGCCCCCACGTGGCCAAATCTGGAAACAGACGTCTGTCGTTATGGACAGCGGTTGCCATGGTAACTTCTCTCCAGCTCTACTCCAGGTAGATATCCTCTGTGGGACAGGCGTACTCCAGATGCTCCTGATAATACTCCTGAAACGCCCGTctgcaatacacacacacacacacacacacacacacacacacacatatatacatacactcatTAGGACAAATACTGGATACTGGcttttcaaaatgatacagtatcaGTATGGCTGTATGGGCCAGTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU212912 lncRNA upstream 70864 8361520 ~ 8361750 (+) True G157022
TU212909 lncRNA upstream 75537 8356218 ~ 8357077 (+) True G157019
TU212780 lncRNA upstream 571974 7846615 ~ 7860640 (+) True G156917
XR_001518589.2 lncRNA upstream 582736 7846483 ~ 7849878 (+) True LOC107197493
TU212778 lncRNA upstream 587720 7841684 ~ 7844894 (+) False G156916
TU212945 lncRNA downstream 128160 8566429 ~ 8567668 (+) True G157052
TU212947 lncRNA downstream 129975 8568244 ~ 8568463 (+) True G157054
TU212961 lncRNA downstream 165320 8603589 ~ 8608021 (+) True G157064
TU212966 lncRNA downstream 242540 8680809 ~ 8683103 (+) True G157069
TU213140 lncRNA downstream 453821 8892090 ~ 8894941 (+) True G157210
XM_007233848.3 mRNA upstream 561 8423666 ~ 8432053 (+) True arsa
XM_022679551.1 mRNA upstream 130834 8291162 ~ 8301780 (+) True LOC103028908
XM_022679549.1 mRNA upstream 551654 7875024 ~ 7880960 (+) True rabl2b
XM_007244087.3 mRNA upstream 566036 7862072 ~ 7866578 (+) True odf3b
XM_015604460.2 mRNA upstream 572104 7851925 ~ 7860510 (+) True LOC103032733
XM_007233845.3 mRNA downstream 28604 8466873 ~ 8474471 (+) True pgc
XM_022679552.1 mRNA downstream 56571 8494840 ~ 8507495 (+) True chkb
XM_007233841.3 mRNA downstream 56572 8494841 ~ 8507495 (+) False chkb
XM_022679553.1 mRNA downstream 70135 8508404 ~ 8513431 (+) True LOC103026556
XM_015601452.2 mRNA downstream 70866 8509135 ~ 8513431 (+) False LOC103026556
TU212659 other upstream 825946 7600567 ~ 7606668 (+) True G156840
TU212485 other upstream 1001046 7372376 ~ 7431568 (+) False LOC111194759
TU212490 other upstream 1028058 7387502 ~ 7404556 (+) False LOC111194759
TU211750 other upstream 3275214 5157154 ~ 5157400 (+) True G156188
TU211262 other upstream 5677502 2738361 ~ 2755112 (+) True G155776
TU212948 other downstream 131661 8569930 ~ 8570877 (+) True G157055
TU213377 other downstream 1502560 9940829 ~ 9941805 (+) True G157383
TU213920 other downstream 3924182 12362451 ~ 12366770 (+) False LOC103031933
TU214078 other downstream 4297363 12735632 ~ 12740999 (+) False hsbp1
TU214177 other downstream 5295676 13733945 ~ 13736102 (+) True LOC107197649

Expression Profile