RNA id: TU212947


Basic Information

Item Value
RNA id TU212947
length 220
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G157054
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 8568244 ~ 8568463 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTATAATGAAGAATGCAAACAGGCTATCAATGCTCGAAAACGGACAGAAAGAATTTTTTACAAACATCCAACGTGGGAAAACCTGATCAATTTGAAGCTCAACCGTGCCAGAGCACGAAGAGTAATTAACACTGCAAAAAAGCAAAGTTGGAGAAACTACACAAGCAAAATAACTAAGAATACCCCAATCACAAAAGTCTGGGACCTTTTGCGGAAAATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU212945 lncRNA upstream 576 8566429 ~ 8567668 (+) True G157052
TU212918 lncRNA upstream 129975 8432614 ~ 8438269 (+) True G157027
TU212912 lncRNA upstream 206494 8361520 ~ 8361750 (+) True G157022
TU212909 lncRNA upstream 211167 8356218 ~ 8357077 (+) True G157019
TU212780 lncRNA upstream 707604 7846615 ~ 7860640 (+) True G156917
TU212961 lncRNA downstream 35126 8603589 ~ 8608021 (+) True G157064
TU212966 lncRNA downstream 112346 8680809 ~ 8683103 (+) True G157069
TU213140 lncRNA downstream 323627 8892090 ~ 8894941 (+) True G157210
TU213183 lncRNA downstream 380362 8948825 ~ 8949097 (+) True G157224
TU213185 lncRNA downstream 397708 8966171 ~ 8966371 (+) True G157226
XM_007233833.3 mRNA upstream 2746 8555188 ~ 8565498 (+) True prpf18
XM_007233834.3 mRNA upstream 2746 8555188 ~ 8565498 (+) False prpf18
XM_007233844.3 mRNA upstream 35077 8520018 ~ 8533167 (+) True cpt1b
XM_022679553.1 mRNA upstream 54813 8508404 ~ 8513431 (+) True LOC103026556
XM_022679569.1 mRNA downstream 251639 8820102 ~ 8826458 (+) True LOC111194761
XM_022679407.1 mRNA downstream 262966 8831429 ~ 8836613 (+) True LOC103043520
XM_007250928.3 mRNA downstream 276513 8844976 ~ 8871398 (+) False LOC103030146
XM_007250927.3 mRNA downstream 276514 8844977 ~ 8871398 (+) False LOC103030146
XM_007250929.3 mRNA downstream 279095 8847558 ~ 8871398 (+) True LOC103030146
TU212659 other upstream 961576 7600567 ~ 7606668 (+) True G156840
TU212485 other upstream 1136676 7372376 ~ 7431568 (+) False LOC111194759
TU212490 other upstream 1163688 7387502 ~ 7404556 (+) False LOC111194759
TU211750 other upstream 3410844 5157154 ~ 5157400 (+) True G156188
TU211262 other upstream 5813132 2738361 ~ 2755112 (+) True G155776
TU212948 other downstream 1467 8569930 ~ 8570877 (+) True G157055
TU213377 other downstream 1372366 9940829 ~ 9941805 (+) True G157383
TU213920 other downstream 3793988 12362451 ~ 12366770 (+) False LOC103031933
TU214078 other downstream 4167169 12735632 ~ 12740999 (+) False hsbp1
TU214177 other downstream 5165482 13733945 ~ 13736102 (+) True LOC107197649

Expression Profile