RNA id: TU213183


Basic Information

Item Value
RNA id TU213183
length 273
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G157224
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 8948825 ~ 8949097 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

atagaacctaaccctacacctaaccctaaccttaacccttaatcaaccataaaatcaaaccctacacctaacccttaccctaaccttaacctaatcttaaaatctaaccctaaacccaatcctaaaatattaagataagcgtttggattagagttgaatgtagggttatattcaatagagaatcatttactttcaccttttagttcatttgcatttaatggacatgtagttgaatgttagttgaatgtcagttgagcatcaaagaggccatca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU213140 lncRNA upstream 53884 8892090 ~ 8894941 (+) True G157210
TU212966 lncRNA upstream 265722 8680809 ~ 8683103 (+) True G157069
TU212961 lncRNA upstream 340804 8603589 ~ 8608021 (+) True G157064
TU212947 lncRNA upstream 380362 8568244 ~ 8568463 (+) True G157054
TU212945 lncRNA upstream 381157 8566429 ~ 8567668 (+) True G157052
TU213185 lncRNA downstream 17074 8966171 ~ 8966371 (+) True G157226
TU213278 lncRNA downstream 394734 9343831 ~ 9344700 (+) True G157305
TU213285 lncRNA downstream 444205 9393302 ~ 9393516 (+) True G157311
TU213288 lncRNA downstream 554977 9504074 ~ 9507133 (+) True G157312
TU213314 lncRNA downstream 636109 9585206 ~ 9590572 (+) True G157334
XM_007250936.3 mRNA upstream 28847 8904735 ~ 8919978 (+) True rbm28
XM_007250933.3 mRNA upstream 45866 8897577 ~ 8902959 (+) False LOC103031618
XM_022679573.1 mRNA upstream 45866 8897666 ~ 8902959 (+) False LOC103031618
XM_015606265.2 mRNA upstream 45866 8897888 ~ 8902959 (+) False LOC103031618
XM_007250934.2 mRNA upstream 45866 8897896 ~ 8902959 (+) False LOC103031618
XM_022679974.1 mRNA downstream 160997 9110094 ~ 9114054 (+) True LOC111194832
XM_022679575.1 mRNA downstream 164882 9113979 ~ 9116076 (+) True LOC111194762
XM_022679576.1 mRNA downstream 164882 9113979 ~ 9116076 (+) False LOC111194762
XM_007250938.3 mRNA downstream 345476 9294573 ~ 9299415 (+) True lrrc4
XM_007250942.3 mRNA downstream 1516692 10465789 ~ 10529492 (+) True LOC103035018
TU212948 other upstream 377948 8569930 ~ 8570877 (+) True G157055
TU212659 other upstream 1342157 7600567 ~ 7606668 (+) True G156840
TU212485 other upstream 1517257 7372376 ~ 7431568 (+) False LOC111194759
TU212490 other upstream 1544269 7387502 ~ 7404556 (+) False LOC111194759
TU211750 other upstream 3791425 5157154 ~ 5157400 (+) True G156188
TU213377 other downstream 991732 9940829 ~ 9941805 (+) True G157383
TU213920 other downstream 3413354 12362451 ~ 12366770 (+) False LOC103031933
TU214078 other downstream 3786535 12735632 ~ 12740999 (+) False hsbp1
TU214177 other downstream 4784848 13733945 ~ 13736102 (+) True LOC107197649
TU214707 other downstream 6101125 15050222 ~ 15050718 (+) True G158369

Expression Profile