RNA id: TU213278


Basic Information

Item Value
RNA id TU213278
length 343
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G157305
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 9343831 ~ 9344700 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctaatcttctcctgtaatgtttcacaagatgggagaatacagaactccaaacgtttgcgtttatgattgtgagtgagaaatggtttcttccgtgcatgcctcccaaacagcttgttggcatgtagatagcgcctgatggttgttttggagactttgtgaccccaagaagctaccatttgttgcaattctgtaacagtgagctttggagaactttttatttctcttatcatcctcctcactgtgtgtggtggcaaaataaacttgcgtcctcgtccaggcttgtttaccactgttccagttgttttaaacttcttaataattcctctgacagtagatatggaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU213185 lncRNA upstream 377460 8966171 ~ 8966371 (+) True G157226
TU213183 lncRNA upstream 394734 8948825 ~ 8949097 (+) True G157224
TU213140 lncRNA upstream 448890 8892090 ~ 8894941 (+) True G157210
TU212966 lncRNA upstream 660728 8680809 ~ 8683103 (+) True G157069
TU212961 lncRNA upstream 735810 8603589 ~ 8608021 (+) True G157064
TU213285 lncRNA downstream 48602 9393302 ~ 9393516 (+) True G157311
TU213288 lncRNA downstream 159374 9504074 ~ 9507133 (+) True G157312
TU213314 lncRNA downstream 240506 9585206 ~ 9590572 (+) True G157334
TU213381 lncRNA downstream 682819 10027519 ~ 10027906 (+) True G157387
TU213382 lncRNA downstream 704111 10048811 ~ 10053975 (+) True G157388
XM_007250938.3 mRNA upstream 44416 9294573 ~ 9299415 (+) True lrrc4
XM_022679575.1 mRNA upstream 227755 9113979 ~ 9116076 (+) True LOC111194762
XM_022679576.1 mRNA upstream 227755 9113979 ~ 9116076 (+) False LOC111194762
XM_022679974.1 mRNA upstream 229777 9110094 ~ 9114054 (+) True LOC111194832
XM_007250936.3 mRNA upstream 423853 8904735 ~ 8919978 (+) True rbm28
XM_007250942.3 mRNA downstream 1121089 10465789 ~ 10529492 (+) True LOC103035018
XM_007250944.2 mRNA downstream 1228043 10572743 ~ 10591523 (+) True gan
XM_007250948.3 mRNA downstream 1250702 10595402 ~ 10628479 (+) True cmip
XM_007250951.3 mRNA downstream 1364668 10709368 ~ 10713982 (+) True klhl36
XM_007250954.3 mRNA downstream 1406999 10751699 ~ 10754698 (+) True LOC103038570
TU212948 other upstream 772954 8569930 ~ 8570877 (+) True G157055
TU212659 other upstream 1737163 7600567 ~ 7606668 (+) True G156840
TU212485 other upstream 1912263 7372376 ~ 7431568 (+) False LOC111194759
TU212490 other upstream 1939275 7387502 ~ 7404556 (+) False LOC111194759
TU211750 other upstream 4186431 5157154 ~ 5157400 (+) True G156188
TU213377 other downstream 596129 9940829 ~ 9941805 (+) True G157383
TU213920 other downstream 3017751 12362451 ~ 12366770 (+) False LOC103031933
TU214078 other downstream 3390932 12735632 ~ 12740999 (+) False hsbp1
TU214177 other downstream 4389245 13733945 ~ 13736102 (+) True LOC107197649
TU214707 other downstream 5705522 15050222 ~ 15050718 (+) True G158369

Expression Profile