RNA id: XM_007250960.3


Basic Information

Item Value
RNA id XM_007250960.3
length 9567
RNA type mRNA
GC content 0.46
exon number 16
gene id hipk2
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 11031065 ~ 11143471 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CACCATTGCAACTTTTGCAGCCActccacacacagacatgcacacCGCGGGCTGAAGCCCAACCTGCTGTTCGGCTCAGCCTCGGAGCCGCTAAACTGCTCTCGTTTGGTTGGGCTTGAGTTGCCGACACCTCGCTGTGGAGCCTTTATAAAGAGCCGGAGCTGTGGATGTGATTTTCCCTCTTGTTTTCTCTATTTTCCCTTCCTGATGAACTGGGCTCGTAATGCAGGAGACAGCGGCGATTCTGTCAGCGGCGCAAGATGGCAGATTTTTATTGAGTTCTGAACTGAAATATCTCTTCATATTTTGCCATGAATAACAGAAACCCTTGCACCGATGGCCCCTGTATACGAAGGTATGGCCTCGCAAGTGCAAGTCTTTTCCCCCCATGCTCTTCAGTCAAGTGCCTTCTTTAGCGTGAAGAAGCTGAAGGTAGAGCAGAGCTGCAACTGGGACATGACCGGGTACGGCACGCACGGCAAGGTCTACGGTCAGAGTGGCAAGCAGAGTGTGTCCGTGGCTCCGGTGGGCATCAACGGCGCCTCCCTCCAGGTGTCCAGCTCCTCGCTGTCCTACGAGCAGGCCCTCCTCTTCCCGGCTGGCCCAGGCCACATCGTGGTGGCTTCGGccagcagcagcacgtctggagCAGCCGGTCAGTTGTTGGGCAGCACAGGCAGTAGCAGTGGGAGTGGCAGCGGAGGCCACAACCTGACACGACGGAGCACAGTCAGCTTGCTGGACACGTATCAGCGATGTGGGCTTAAGCGCAAGAGCGAGGAGCTGGACAACGGAAACAACGGCAGTGGGGGCAGCGTGCACGTGGTtgaagagcagcagcagcagcaacagcaacaaGGGCCAGCGGCCATGATCCAGAACAACGGGCAGAGCGGAGCAGGTGTCGCTGCAGCGACCGCAGCCACCGCCTCCACTACAGCCACATCCAAGACCAGTGGTGCAAACAGTGAAGGCGACTACCAGCTTCTGCAGCATGAGGTGCTGTGCTCTATGACCAACACGTATGAGGTGCTGGAGTTCCTGGGCAGGGGCACTTTTGGTCAGGTGGTGAAGTGCTGGAAGCGTGGCACCAGCGAGATTGTGGCCATCAAGATTCTGAAGAACCATCCGTCGTATGCCCGGCAGGGTCAGATCGAGGTCAGCATTCTGGCACGTCTCAGCACGGAAAGCGCAGACGACTACAACTTTGTGCGAGCCTACGAGTGCTTCCAGCACAAGAACCACACGTGCCTGGTCTTTGAGATGCTGGAGCAGAACTTGTACGACTTCCTCAAGCAGAACAAGTTCAGCCCCTTGCCACTCAAGTACATCCGGCCTGTCCTGCAGCAGGTGGCCACTGCCCTGATGAAGCTCAAGAGCCTGGGCCTGATCCACGCTGACCTGAAGCCTGAGAACATCATGCTGGTAGATCCGGCCCGCCAGCCATACAGGGTCAAAGTCATTGACTTCGGCTCTGCCAGTCACGTGTCCAAAGCTGTGTGCTCCACCTATCTGCAGTCCAGATACTACAGAGCTCCCGAGATCATCCTTGGCCTGCCCTTCTGCGAGGCTATAGACATGTGGTCCCTGGGCTGCGTCATCGCTGAGCTCTTCCTGGGCTGGCCGCTTTACCCTGGGGCGTCCGAGTACGATCAGATTCGCTACATTTCCCAAACACAGGGACTGCCGGCGGAGTATCTGTTGAGCGCAGGCACGAAAACCACCAGGTTTTTCAACAGAGACCCGGACTCTACCTATCCGTTGTGGAGACTGAAGACTCCAGAAGACCATGAAGGGGAGACAGGAATCAAGTCGAAGGAAGCTCGCAAGTACATCTTCAACTGCTTGGATGATATGGCACAGGTGAACGTGACCACAGACCTGGAGGGCAGTGACATGTTGGCAGAGAAGGCAGACCGGAGGGAGTTTATCGACCTGCTGACCAAGATGCTGACCATTGACGCAGATAAGAGGATCACACCCATTGAGACGCTCAACCACCCCTTTGTTACCATGGCCCACCTGCTAGACTTCCCCCACAGCACACACGTTAAATCCTGCTTCCAGAACATGGAGATTTGTAAGCGTCGGGTGAACATGTACGACACAGTCAACCAGAGTAAAACCCCCTTCATCACACACGTGGCCCCCAGCACCTCCACCAACCTCACCATGACATTCAACAACCAGCTCAACACTGTGCACAGCCAGGCCACCAACCTGGCTCCCTCCACCAGTGCCACCCTTTCCCTTGCCAATCCTGATGTCTCCATACTAAACTACCAATCTGCACTCTACCAGCCCTCCGCCGCCCCCATGGCTGCCGTGGCTCCCAGGACCATGCCCCTGCAGCCCAGCGGCCCACAGCTCTGCGCCACCCGCCCTGACCCCTTCCAGCAGGCCCTGATCGTCTGCCCACCCGCCTTCCAAGGGCTGCAGGCGTCCCCCTCCAAACACAGTGGCTATTCAGTGCGTATGGAGAATGCTGTTCCCATAGTGACGCAGGCCCCCGGTGCACAGCCCCTGCAGATCCAGCCCGGCCTTCTCACACAGCAGGCCTGGCCCTCTGGTACACAGCAGATCCTGTTGCCTCCTGCGTGGCAGCAGCTCACACATACCTCCGTGCAGCACGCCGCCGTCATCCCTGAGACCATGAGCAGCTCTCAGCCTTTGACCAACTGGAGGAATTCCCATCCCCATGGGAGTCATTACAATCCCATCATGCAGCAGCCAGCCTTGCTTGCTGGCCATGTGGCCCTGCCCTCCCAGCAACCTTTGAATGTGGGTGTGGCTCATGTTATGAGGCAGCCATCAAACAATAATTCCTCAAAAAAGAACAGGCAGCACCAGATGAACAGCAGGAATGTGTCTGCGTATGAGGTGTCCTCCTCACAGGCCATGGTGTCCCCTCAGCGCTCCAAGCGTGTGAAAGAGAATACTCCTCCAcgctgtgctgtgctgcagAATGGCCCCTCTGCCCCTTGTGGCCCACCCCAGGCCTGCGGAGAGGGAGCAGGGTGGGGAGAAGAGCAGCAGGCCTCCAGCACCACACGAGACCACCACAATGCACAACATACCCAACACAACCCTCCACGCCAAACCATCGTCATCCCAGACACCCCTAGCCCAGCTGTCAGCATCATAACCATCAGCAGTGACACGGATGAGGAGGACGAGCACAAGCAGCCCAACAACACCAGCACGACATCCAAGCAGCGGAAGAACGTTATCAGCTGTGTGACTGTCCACGACTCCCCAGACTCTGACTCCAGCAATAACAGCCCCTATGCTGTGCAGTCCCGGCCCAGCGGCCCCAACGCCAACAACTATGACTCTAAGGCCGCAGTGTTGGATGACTACAGCAATGGAAATCCTCGCACCATCATCATCCCCCCATTGAAGACCCAAACCAGCGAAAGCTTGAATGAGTGTGACCGCCTTCACCCTGACACTATGAACCACCAGAATTCTGCCTACAAGTTTAAGTCCTCCAATGGAGGGCTGTCTGGCAACAATCATTTGTCGGGAGGAATTCCTGGAGGCGGGGCTTATCGGCAGCATCGCACTGGGCCAAACCCCTTCCAGCAGCAGCCACTCAATCTCAGCCAGgcCCAGCAGCACATGGCAGTGGAAAGAAATGGAGGGCACCGGCGGCAGCAGGCCTACATCACCCCCACCATGGCTGCCCAGGCTCCCTACTCCTTCCACCACAACAGCCCCTCTCACAGCACCAACGTGCACCCCCACCTAGCTGCCACACATTTGTCTGGCCAACCCCACCTATACACTTACACAGCCCCTGCTGCCTTGGGCTCCACCGGCACTGTGGCACACCTGGTGGCTTCACAGGGTTCAGCCCGCCATGCTGTCCAGCATGCCAGCTACCCGCCGGGCATCGTTCACCAGGTGCCCGTCAGCATGGGCCACCGAGTCCTGCCCTCGCCCACCCTGCACCACAGCCAGTACCAGGCCCAATTTGCCCACCAGACATACATCAGCGCTTCACCCGCCTCCACTGTCTACACTGGATATCCTCTGAGCCCCACCAAGATGAACCAGTACCCTTACCTCTAGAGCCGAAAACACTGGAGCCTAGCCTACCGCTGCTTACCGTTCTACCCCTCCactagagacagagagacaagcTCAAGCCTAAACACCCCAAACCTGTCCCCTGCCCCTGACACGCTTAAACTTGAAGACAATTAAGATGCTgatagagaagaagaaaaagaagaagaaaaagaagatgaaGAGTACTCTGTGAGGGAATATAATGGAGGGATAAAGTTTCAATGGAGCTTTCTTTATATACAAGTGTTTTTCCTCTCAAAAGGgccagttcagttttgttttgtcatttattttcttgttaCTCTTATCATGGAAATCTGAGACTTTTTGTTCCTTTTACATGATCAGTTTATTTTACAGCAAGGTCACATCTTTTTGGGAGATATGGAGAGTTTTGCTAAACTaaggtttgtttttaattttttcattttttcattttttaaaggcaTTCAGTGACTGTTGAGCTGAGGTCACATTGTGGATGAGAACTATGGATAAAGGTGAAATACGGATATCTGCTGctctacaaagaaaaaaataatgatggcCTTGAACTGTCTTAAAACATTTCCAAATCACACACGGTCAGGAGTATGTGTATACTCCGCCGTCCTCTCCTGACAACAACTGGAGGATCTTGtggaaatatgacaaaatagacaaaaactTTCTAGTGTATTTATAGacttttctctgtttgtgtttGCATTTAGACAAGAAAATACGTTTTGTCATACAGTAGGACATTTAGCTAGGCCCCTTTTTAGAATGTAGCAGGCTGCACCCGTTTATTTTATGAAGAACCTTTCTGATaccaatagatttttttttcctcctctatAAATGTGATTGCACAAAGTGGTTGTAATAACAAGCATGTACAACATAAAAGtcagtgtgtgcgtgtatgcTGCCGTCAGCCATGTGCGTGGTACACCTTCCTCTGCACATTTGTGCGATGTATTCTCCACAGTCTTAGGTTTATCATTGTTCCCTCGTAGTGCCTTACAGATATTAAGACAGTTTACTTGGCTGGAACCCTCTAGAACCAACAGAAACTAGTTTGAGAGTTGGCTCCTTGATTTGAACATCGTTTGTCTgaggtgttttgtttttgacttCCAGGTGTGAACGTAGTCCtaaatgttatttataggtatattatTATTCCACACAAATTCCCATCTTGTACAACAGTGCTTCTTGTTTAGCGTGCATGaggttatttaacattttagatGAAGACACTTGCCTGGGGTAATGAACCAAAGTTGTCATTTGGTAAAGATTAGTAACATTtgttactatattatatatatagtatgtttACTACAGTATGTGTATCATTATTAGCTTTGTGTCTTAGAAGCCTTGATACCCATCCAGTGGCACTGAATTTAGGTTGTGTTCGTTTTAGTTATAAAAGGATGATGAATTCATGTGTAAAAGTCATGTGTAAGCATTACACATTATTAATTTGACATCTGTGCTACTACATGAAGTCTGGTTAGTAGtcagaaaaaaaattctgaactGAGGACAAAGATCTGAATATCATCTGCGAAAGGAGAAGTAGAACTCTGTATGATGTCCAGGTACAGCATGCCAGGCATTTAAAGGAGGTCAGAAGAGTTGGGAGTGTATGCAGAGAGAGAGGCCTTGATGGGCCCCACTGAGCCTGGTGCAGAAAATGGTGTAGAAACAGTAAACCTTGGGAGGGTGAGAGAGCGGGTCTAGGTAGGGATAGGCGTGATTAAGGTGCTAAAAGATGGCACTGGCTGGATTTGGATGGGAATTGTAGGATGGTGAAGAAAGCCTAAATTCCACATCTTAAAGAGAATAGCATGTTGGCTTTGAGCACGTAGAACCTGGAGGAGGCTGCGCTACAGGAGGCACTGCATGAATGCACACCATACTCTGATCTGAGGCATCGTTCAGCAGGGTCAGTCTATAAAGACTGTGATCCTCACAGCTTCCCTGCAGAAATTGAAGCCTACCACTAAATGTGTACACCTGGAAGAATAGTGCCGAAATAACcatgttattttgttgtttctCTTCATTGTACTTACAGAATCACTTGTGCTAGATAGTGTATATCACTTTGAGAGAAAGGGATAGCTGATATGTTGAAGAATTTGTgggccaatgtttttttttcttttttgctgctTGAGTTGCATCATCTTGTCTATTAGCCAATGATTTCATTTACGTTCGTGGTATTAATTTTGTCTTTACATAGAGGGCACATGCATGTGTTTATGGGAACGCATTTGTTTTTCCCCTCTCATGTCATGCCATAGTACTTGCATTTGAAGTGGTTGTGTTTCttcattgagattttttttgtatcatgcTATGCTACAGATACTTTGTGTAGAGATTTTAGAGATTGCTGCAATAATTTTCATGGGTGTTTTTTAGtggacattttttgttttattattattattattattattattattattattatacattaagaTCATATTTCTGTTTAGTGGTTGTTAAGTTATAGGGATGTTGAGTATACATTTAGGTTTAAGTACCTGTGCAAAGAAAGCCTCCTTTTTGTAGAAAGCATAGGCTGAGGTTCCAACAATTTCAGCTCAGATGGACATCATTAACATCTTGTCAGTTTGCGTGGTTGCTGGGATGCCCACTGCTTTTCTGGCAATATTTGGTTGGTTTAGGCTCACTGGCTCCTGCACACTGAGAGAGAGGTTGCTCTGATATCAGAACCACGTACAAACATTCCATTCCTGAAGGAGTCATTATGTCTCTCACTGCACTGTCTGTAGTCTCCAGTACTCATGCAGTACACTGGCCTGTCTGACCAAACTGGGACTCGGGGGACTGtcatttaatacttttatttcttCCCACCAAAGAAGTTCAGCATGTTAGTGATGCACAAAAAAGGACCCTTGCTGAAACtgagaaggaaaaaaggaaaagtcaGTTCAGTCTTAGGAATATACACATCCACAGCACACATGAGTAGACTGTGTAAAACTCAATCACGTGaacacattataaatgaatcCAGTCTTCATCTAAtttgtttgtaatttttagCTGGTCAGTGTTTTTGATGTTTAAATTCTCTTGTCCTCCATTTCATCTTATCTAAAGGAAAGTAAGGCCCCTTTtaacaaacatttattaaagcatttttttcttcacttcttCACTACAATTAATTTTTCAGCTTTACTGGTGTTATAAAGTGAATATGGTAaacagcaaagaaaaaagtAGTTAGGTTGTGCTCCCTAGTGACCTTTGAGTGGAATGAGATACATTAGAGAAATACCTTTTACAAAGTGGTCACTTGCACAAAATGAATGTACAATGTGAGACTAAAACATCTGCTATATATCATCACATATTACTACTAATGGGTGTGAACTGTCATGATTTTACTGTTACTCTTACATTGTTCCTCAAAAAGAATGCAATAAGTCCCACAAGAAAAACATGACTTGTCAACATTGTTTTGACAATTTTTCTCTAAATTCCtcaaattaatgtttattttcctATTGTTCTGCTTTCATTTGTTAGTGTTCACATCCAAACGCCATTAAATGAGTCGTATACAAGCCCTATGATCCCTACAAAGTAATAACTTACTTTTGTGATGTACTGCTTTGATGCAATGTGTgtctttttaagaaatgtaggcAGTAATGTAGATTCAGTGACCTTATAATTACCAAAATGTGCTATGCCTGAGAAGTTAGCatcttttatatatacataacaattgaaaacaaaaaatctttttaattatGGTTTTATGTAATCTCCTCCTAATAATGAATTTTCATGTCAAACACTGCCTTTCAACTTATCAACTCGAAGCTTTAAGCGGTTgtcaaattgaaaacattcttAGAGTGGTTGTTTTGTAAGGCTTTGTGGTatcccttttttgttttattgcatttcCCCAAAAGAGTATCCAGTTTAACGTTCCACACAATTAATAACCTTTGTTGCCCCAACGTGAAAAACATTCCTAGTGCCAGTTGGCCTCTTAGGTGTCTACTTGCATTTTTAGTAGCTGATACAACAAAATCTAGTCTATCACCATAAATAATGCAATCAGTATGTAAAGCTGAAGCTTTGTAAAGCACACACTGCTAAACAAACTTGGAGTTGACTGGGTTTTGGTGGCACTTCCACAATCTTACggctttttgtgttttacagtgcTTTCTCTTCAGGGCATGAGCTGACATGGAGCAGTCATGGGTTTAATGGAGTCATTAATCTCTGCATGTGCAAATGTGCTAAGAGGCCAAATATTACAATATGGCCATTTTCCATATGCCATTTTAGAACCAAAAAATAAGCAATGACCTTTAACCCTGAGGTGGGGGTCGAATTCTAGAGTAATTTTAACCTTCAGATTCTGTGTCGGGTGAACTCATCATTGACTGAAACCTGATTGTCTCACCAGCCCTAAAGGCTCTTTGTATTTGTTATACCTTCAGTTTACATGGTGATTTATGGTAAAGtgtaatacatacagtataaaacattcTCTCTGTACAGATAACGCAAAACGGACAAATAGTCATGAAGAAGTAACAGTTTGTCACAAAAATCACCAGTGTAATCTGTTATGTAGCTGTGACACACTGTAGCCATTTCTGCAGCCATCTGTGACATGAACATTTTTTCTACTTGCACAGCAACGTtcacaataaaatgtaaactaaatatttttctataatGTCTCAAGACCTAAGAAAGCATCCGACCCTGACCCTGATTTTGCTGTATGGTTTCTCAATGGTGTATCTCATTTAGTTGTTGTCAAAGCTATTGTGTGCTGCAGTATTTCCAAGTATACTTCTTTGTTaatgtctcttgctctctctgttattatttttatttttatttagctttcTTTATTGGGGATTTGAAGAGTGTGATGTCTTATTATTTCAATCTGTTAATGTAGCGCTATGTGTACCCTATACCTTAGACTAATATTAAGTATGTTATGAGAATGGATATTTTACTGGCTTAATagaatgttaaaaatgaatataataataagaagaatgaTTTAACTCCTAAAAGTTGAGTACTTGCTACTAAGCGCTTGTGTTACCATTAAGATGTTGTGTGTTTCTCTTAATTTTCGTTGTAGAAAAATTGAGTGAATTTATATTAGGCTTCGACAACTAATGATAGCAGTGTAAATTTATGGAGGATTTTAACAAACATCTGGGTGATAGAAGAATATAGTTATTTTAACTGTTCTATTTACTAACTGTAGGGTGAGAAGGGGCTTGCATTGTGGTGAACTATGTTATAGCTTGTTATTCACTGttacttttgatcattttttcgGTCTCCGAGGTGAATCGAGTTATTAATGAGAATTTGTATGCTCACATATGCATATTGTATATGTGTAGAAATGTAATCACACTTTGTCTTGAATTTACATTAAACTGTTAAGTCACGGCA

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0045634 regulation of melanocyte differentiation biological_process
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K08826 HIPK; homeodomain interacting protein kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU213612 lncRNA upstream 12252 11018415 ~ 11018813 (+) True G157557
TU213593 lncRNA upstream 148597 10881730 ~ 10882468 (+) True G157546
TU213587 lncRNA upstream 274403 10755079 ~ 10756662 (+) True G157540
TU213586 lncRNA upstream 276682 10751729 ~ 10754383 (+) False LOC103038570
TU213553 lncRNA upstream 317092 10700788 ~ 10713973 (+) False klhl36
TU213791 lncRNA downstream 166544 11310015 ~ 11314603 (+) True G157703
TU213866 lncRNA downstream 324455 11467926 ~ 11468139 (+) True G157761
TU213869 lncRNA downstream 344589 11488060 ~ 11489560 (+) True G157764
TU213871 lncRNA downstream 348768 11492239 ~ 11492486 (+) True G157766
XR_002651240.1 lncRNA downstream 350144 11493615 ~ 11501536 (+) False LOC111194766
XM_022679594.1 mRNA upstream 106643 10917452 ~ 10924422 (+) True LOC103040136
XM_022679595.1 mRNA upstream 106643 10917452 ~ 10924422 (+) False LOC103040136
XM_022679593.1 mRNA upstream 118098 10902953 ~ 10912967 (+) True LOC103045650
XM_022679590.1 mRNA upstream 129506 10766016 ~ 10901559 (+) True srgap1
XM_022679591.1 mRNA upstream 129506 10766017 ~ 10901559 (+) False srgap1
XM_022679598.1 mRNA downstream 2691 11146162 ~ 11206745 (+) True LOC103046273
XM_022679597.1 mRNA downstream 2691 11146162 ~ 11206745 (+) False LOC103046273
XM_022679600.1 mRNA downstream 2691 11146162 ~ 11206745 (+) False LOC103046273
XM_022679599.1 mRNA downstream 2691 11146162 ~ 11206745 (+) False LOC103046273
XM_007250962.3 mRNA downstream 88490 11231961 ~ 11266320 (+) True fam107b
TU213377 other upstream 1089260 9940829 ~ 9941805 (+) True G157383
TU212948 other upstream 2460188 8569930 ~ 8570877 (+) True G157055
TU212659 other upstream 3424397 7600567 ~ 7606668 (+) True G156840
TU212485 other upstream 3599497 7372376 ~ 7431568 (+) False LOC111194759
TU213920 other downstream 1218980 12362451 ~ 12366770 (+) False LOC103031933
TU214078 other downstream 1592161 12735632 ~ 12740999 (+) False hsbp1
TU214177 other downstream 2590474 13733945 ~ 13736102 (+) True LOC107197649
TU214707 other downstream 3906751 15050222 ~ 15050718 (+) True G158369
TU214761 other downstream 3984897 15128368 ~ 15136198 (+) False LOC111194769

Expression Profile