RNA id: TU213871


Basic Information

Item Value
RNA id TU213871
length 248
lncRNA type inter_gene
GC content 0.29
exon number 1
gene id G157766
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 11492239 ~ 11492486 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cattccaccttaaatattgcTGCAGGAATAGAAAGTATGTTGCGCAATTTAAGGTGGTACTGAGAATGTCCAATAGAGCGGTCTGCTCAAACAAGAAGCAAAAtataaagctattttttttgtgaCGGCCATAGGATCGGAAAATGCACCCTTTGAATCCATTAAAAAGTTTCATAGTTAGTAATGTTAGTagagtaatattattattattattattattattattattattattattattattatta

Function

GO: NA

KEGG:

id description
ko00950 Isoquinoline alkaloid biosynthesis
ko00965 Betalain biosynthesis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU213869 lncRNA upstream 2679 11488060 ~ 11489560 (+) True G157764
TU213866 lncRNA upstream 24100 11467926 ~ 11468139 (+) True G157761
TU213791 lncRNA upstream 177636 11310015 ~ 11314603 (+) True G157703
TU213619 lncRNA upstream 348770 11132366 ~ 11143469 (+) False hipk2
TU213612 lncRNA upstream 473426 11018415 ~ 11018813 (+) True G157557
XR_002651240.1 lncRNA downstream 1129 11493615 ~ 11501536 (+) False LOC111194766
XR_002651239.1 lncRNA downstream 1925 11494411 ~ 11501536 (+) True LOC111194766
TU213884 lncRNA downstream 18957 11511443 ~ 11512521 (+) True G157771
TU213886 lncRNA downstream 19499 11511985 ~ 11512521 (+) False G157771
TU213888 lncRNA downstream 23374 11515860 ~ 11516109 (+) True G157773
XM_022679613.1 mRNA upstream 30594 11450922 ~ 11461645 (+) True LOC103046882
XM_022679602.1 mRNA upstream 198566 11269015 ~ 11293673 (+) True nup205
XM_007250962.3 mRNA upstream 225919 11231961 ~ 11266320 (+) True fam107b
XM_022679616.1 mRNA downstream 538650 12031136 ~ 12333915 (+) False LOC103032257
XM_022679617.1 mRNA downstream 539102 12031588 ~ 12333915 (+) False LOC103032257
XM_007250499.3 mRNA downstream 727431 12219917 ~ 12333915 (+) True LOC103032257
XM_007250498.3 mRNA downstream 847520 12340006 ~ 12362527 (+) True LOC103031933
XM_007250504.3 mRNA downstream 1022976 12515462 ~ 12524112 (+) True utp4
TU213377 other upstream 1550434 9940829 ~ 9941805 (+) True G157383
TU212948 other upstream 2921362 8569930 ~ 8570877 (+) True G157055
TU212659 other upstream 3885571 7600567 ~ 7606668 (+) True G156840
TU212485 other upstream 4060671 7372376 ~ 7431568 (+) False LOC111194759
TU213920 other downstream 869965 12362451 ~ 12366770 (+) False LOC103031933
TU214078 other downstream 1243146 12735632 ~ 12740999 (+) False hsbp1
TU214177 other downstream 2241459 13733945 ~ 13736102 (+) True LOC107197649
TU214707 other downstream 3557736 15050222 ~ 15050718 (+) True G158369
TU214761 other downstream 3635882 15128368 ~ 15136198 (+) False LOC111194769

Expression Profile