RNA id: TU213886



Basic Information


Item Value
RNA id TU213886
length 537
lncRNA type inter_gene
GC content 0.54
exon number 1
gene id G157771
representative False

Chromosome Information


Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 11511443 ~ 11512521 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


TCGAGCCTCGAGGGAacgatggtgttgaatgctgaactgtagTCCACAAACAGCATTCTCACATACGTGTCCTTCTTGTCCAGGTGAGAGAGGGCAGTGTGCAGGGTCAGGGCGATCGCATCGTCAGTGGATCTGTTCTGCCTGTatgcaaactgcagtgggtccagGGTGGCAGGCAGTGAGGAACAGATGATATCCCTAACCAGCCTCTCAAAGCATTTGCTTATGATGGAGGTTAGGGCAACAGGTCGCCAGTCATTCAGACAGGTGGTGTGGGCAGTCTTTGGAACTGGCACAATGGTGGCCAGTTTAAAGCAAGCTggcacaacagagagagagagtgatgtatTATAAATGTCCGTGTAGACTGCTGCCAGTTCTCTATAGCAGGCTTTAAGCACTCTCCCGGGAATGCCATCCGGACCAGCTGACTTGCGTGGATTTATCCGCTGAAAAGCTCTGCGCACGTCAGCTTCAGAGACGGAGGGTGGGATGGGatcagcggtgggcggggcgcactctgggagcgcagcggtg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
XR_002651240.1 lncRNA upstream 10449 11493615 ~ 11501536 (+) False LOC111194766
XR_002651239.1 lncRNA upstream 10449 11494411 ~ 11501536 (+) True LOC111194766
TU213871 lncRNA upstream 19499 11492239 ~ 11492486 (+) True G157766
TU213869 lncRNA upstream 22425 11488060 ~ 11489560 (+) True G157764
TU213866 lncRNA upstream 43846 11467926 ~ 11468139 (+) True G157761
TU213888 lncRNA downstream 3339 11515860 ~ 11516109 (+) True G157773
TU213897 lncRNA downstream 79443 11591964 ~ 11592991 (+) True G157782
TU213896 lncRNA downstream 81512 11594033 ~ 11597529 (+) True G157781
TU213914 lncRNA downstream 801195 12313716 ~ 12318215 (+) True G157798
TU213911 lncRNA downstream 813346 12325867 ~ 12433296 (+) True G157795
XM_022679613.1 mRNA upstream 50340 11450922 ~ 11461645 (+) True LOC103046882
XM_022679602.1 mRNA upstream 218312 11269015 ~ 11293673 (+) True nup205
XM_007250962.3 mRNA upstream 245665 11231961 ~ 11266320 (+) True fam107b
XM_022679616.1 mRNA downstream 518615 12031136 ~ 12333915 (+) False LOC103032257
XM_022679617.1 mRNA downstream 519067 12031588 ~ 12333915 (+) False LOC103032257
XM_007250499.3 mRNA downstream 707396 12219917 ~ 12333915 (+) True LOC103032257
XM_007250498.3 mRNA downstream 827485 12340006 ~ 12362527 (+) True LOC103031933
XM_007250504.3 mRNA downstream 1002941 12515462 ~ 12524112 (+) True utp4
TU213377 other upstream 1570180 9940829 ~ 9941805 (+) True G157383
TU212948 other upstream 2941108 8569930 ~ 8570877 (+) True G157055
TU212659 other upstream 3905317 7600567 ~ 7606668 (+) True G156840
TU212485 other upstream 4080417 7372376 ~ 7431568 (+) False LOC111194759
TU213920 other downstream 849930 12362451 ~ 12366770 (+) False LOC103031933
TU214078 other downstream 1223111 12735632 ~ 12740999 (+) False hsbp1
TU214177 other downstream 2221424 13733945 ~ 13736102 (+) True LOC107197649
TU214707 other downstream 3537701 15050222 ~ 15050718 (+) True G158369
TU214761 other downstream 3615847 15128368 ~ 15136198 (+) False LOC111194769

Expression Profile