RNA id: TU213888


Basic Information

Item Value
RNA id TU213888
length 250
lncRNA type inter_gene
GC content 0.55
exon number 1
gene id G157773
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 11515860 ~ 11516109 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gcaggAGATGATCAGATATTCCAGCTCCGGCGAGCAGAAAGACTCGATGAAATGTACATTCCTCCGATCACACCAAGCATTGTTGATCAGGAAACATACACCACCTCCCTTACTTTTCCCAGAGAGCTCTTTGGATCTGTCGGCGCGGTGCAGAGAGAACCCCGCGGGTTCTATGGCGTGGTCGGGTATGTCCGCGGATAGCCAGGTCTCTGTGAGGCAGATCACGCTGCAGTCACGCATCTCCCGCTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU213884 lncRNA upstream 3339 11511443 ~ 11512521 (+) True G157771
TU213886 lncRNA upstream 3339 11511985 ~ 11512521 (+) False G157771
XR_002651240.1 lncRNA upstream 14324 11493615 ~ 11501536 (+) False LOC111194766
XR_002651239.1 lncRNA upstream 14324 11494411 ~ 11501536 (+) True LOC111194766
TU213871 lncRNA upstream 23374 11492239 ~ 11492486 (+) True G157766
TU213897 lncRNA downstream 75855 11591964 ~ 11592991 (+) True G157782
TU213896 lncRNA downstream 77924 11594033 ~ 11597529 (+) True G157781
TU213914 lncRNA downstream 797607 12313716 ~ 12318215 (+) True G157798
TU213911 lncRNA downstream 809758 12325867 ~ 12433296 (+) True G157795
TU213926 lncRNA downstream 859313 12375422 ~ 12377970 (+) True G157807
XM_022679613.1 mRNA upstream 54215 11450922 ~ 11461645 (+) True LOC103046882
XM_022679602.1 mRNA upstream 222187 11269015 ~ 11293673 (+) True nup205
XM_007250962.3 mRNA upstream 249540 11231961 ~ 11266320 (+) True fam107b
XM_022679616.1 mRNA downstream 515027 12031136 ~ 12333915 (+) False LOC103032257
XM_022679617.1 mRNA downstream 515479 12031588 ~ 12333915 (+) False LOC103032257
XM_007250499.3 mRNA downstream 703808 12219917 ~ 12333915 (+) True LOC103032257
XM_007250498.3 mRNA downstream 823897 12340006 ~ 12362527 (+) True LOC103031933
XM_007250504.3 mRNA downstream 999353 12515462 ~ 12524112 (+) True utp4
TU213377 other upstream 1574055 9940829 ~ 9941805 (+) True G157383
TU212948 other upstream 2944983 8569930 ~ 8570877 (+) True G157055
TU212659 other upstream 3909192 7600567 ~ 7606668 (+) True G156840
TU212485 other upstream 4084292 7372376 ~ 7431568 (+) False LOC111194759
TU213920 other downstream 846342 12362451 ~ 12366770 (+) False LOC103031933
TU214078 other downstream 1219523 12735632 ~ 12740999 (+) False hsbp1
TU214177 other downstream 2217836 13733945 ~ 13736102 (+) True LOC107197649
TU214707 other downstream 3534113 15050222 ~ 15050718 (+) True G158369
TU214761 other downstream 3612259 15128368 ~ 15136198 (+) False LOC111194769

Expression Profile