RNA id: TU213911


Basic Information

Item Value
RNA id TU213911
length 52
lncRNA type read_through
GC content 0.06
exon number 3
gene id G157795
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 12325867 ~ 12433296 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tttttttttttgtttttgtttttttttttttttttttttttattttacattt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU213914 lncRNA upstream 7652 12313716 ~ 12318215 (+) True G157798
TU213896 lncRNA upstream 728338 11594033 ~ 11597529 (+) True G157781
TU213897 lncRNA upstream 732876 11591964 ~ 11592991 (+) True G157782
TU213888 lncRNA upstream 809758 11515860 ~ 11516109 (+) True G157773
TU213884 lncRNA upstream 813346 11511443 ~ 11512521 (+) True G157771
TU214070 lncRNA downstream 214692 12647988 ~ 12650184 (+) True G157903
TU214073 lncRNA downstream 222513 12655809 ~ 12661108 (+) True G157905
TU214079 lncRNA downstream 302336 12735632 ~ 12736988 (+) False hsbp1
TU214098 lncRNA downstream 308552 12741848 ~ 12758089 (+) True G157920
TU214105 lncRNA downstream 429093 12862389 ~ 12862656 (+) True G157926
XM_022679613.1 mRNA upstream 864222 11450922 ~ 11461645 (+) True LOC103046882
XM_022679602.1 mRNA upstream 1032194 11269015 ~ 11293673 (+) True nup205
XM_007250962.3 mRNA upstream 1059547 11231961 ~ 11266320 (+) True fam107b
XM_007250504.3 mRNA downstream 82166 12515462 ~ 12524112 (+) True utp4
XM_007250514.3 mRNA downstream 302223 12735519 ~ 12741002 (+) True hsbp1
XM_007250515.3 mRNA downstream 350503 12783799 ~ 12800375 (+) True mlycd
XM_007250516.3 mRNA downstream 1185392 13618688 ~ 13647775 (+) True vps9d1
XM_007250519.3 mRNA downstream 1226634 13659930 ~ 13664333 (+) True spata2l
TU213377 other upstream 2384062 9940829 ~ 9941805 (+) True G157383
TU212948 other upstream 3754990 8569930 ~ 8570877 (+) True G157055
TU212659 other upstream 4719199 7600567 ~ 7606668 (+) True G156840
TU212485 other upstream 4894299 7372376 ~ 7431568 (+) False LOC111194759
TU214078 other downstream 302336 12735632 ~ 12740999 (+) False hsbp1
TU214177 other downstream 1300649 13733945 ~ 13736102 (+) True LOC107197649
TU214707 other downstream 2616926 15050222 ~ 15050718 (+) True G158369
TU214761 other downstream 2695072 15128368 ~ 15136198 (+) False LOC111194769
TU214762 other downstream 2695072 15128368 ~ 15136198 (+) False LOC111194769

Expression Profile