RNA id: TU213927


Basic Information

Item Value
RNA id TU213927
length 2522
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G157807
representative False

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 12375422 ~ 12377970 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCtgcatgaattaaaaaatgtgagaaaaaaaacaaacatggaaCAAAAGCTTGTTTTATTACCATTTCAACTTCAATCCAACATCCTATATGCACATTAGCTACAAGTTTAAAAATTAGATTCCATTTTCTTTACATATAATACATGTTTTCCCAACACATGTTAATAAATACCAATAGACTTCAACTCTGTAAAacaatttacacaatttaaaatgACTAGCCTTGAACTTCTGCAACTTTGCATCATTCACAGTTATGTTTTCTGACAGAAATCTCTGCCCACCTACACAGCTCACAGCTCAGTGGTGACCAGGCTGAAATGTACTGTTCACAAAAGGCATACAGATTTATCTGCCATGTTGATTTCTGCAACTGTATGTTAGTGATATCTGAACActcatatttaatacaaatgcatttttttatataaaaacaaataataaaaaaacaacaagccaTGGATTTGTGTAAAACCATGTAGATCAGAAGATGGCTTGTAATATGTGATAAAGGCATAGTACTACAAAGCCAGGGAGAGCGGTCCTCAGAGATGCATCTTCTCCATCCGGGTTGGCTGATATTTGTATGAGAATGTGCAGCAATTTTCTGTTCTCTTGCTCAGGTTTCTTGTTTGTCATAAGAACCGAATATATTGTAATTAGGTGAATTACGCAACAGAGGGTGATGACTTATTGATATCTGTGGCTGCTACAAATAAGTAGAAAAGGTTGATTCTCCAGTATCAGTAATCTTACTGTATGTACATAGTATTCTCTTACACTGGCTACTTGATcattaatgttaatgtatttgttttccTTGCTAAATTGTCTTCAGTAAAAATATTACACTATTTTTGTAAACGGTATTGTTGCTACTAGAAATTCCTGTCTGATAAGTGTCTGTATAATGTTAAGTAGGAATAGTAAGATCACTTGAGACCACAGGGATAGATAGCATGAGAAGCTGGAGCTGAGATGATCCACCAAGAGTGTGCCAACACTTTTAACATCAGCTAAAGGATATGTGCTATATTTACACACAGTAAAGGATATGTGATTTTGCTCCCAGAAAAAAGCTCCTCTCCTGATCCTGATTTGGCTGCTGGGCAGGCCTGTCATGACAATAACATTATCACTAATTATTAACCTGCACAGTATATGAACATGAACTCATGAAATAATTTTTCACAAATCTCGATACAGCCAATTATGGCTAATTTGTCTTAGCTAAGAGATTTCATTAATGGGAATTAggtgacatttttattttatttaattttatactaaaaatatatacatatttaaaacttCCCATGTCCCAACATCTGAATGTTCTCAATTACACAATGTgtattattctttaaaaaaagttggaaACTGCATTATTATGCATACAATTACACTAAAATtgcaattacataatttattgcaATACATTCTAGGCTAACATCCAAATATTTTGAtcatcatgacaggcctactgATGAGAGAACAAAACAGAATGTTTTCCACTTAACATGAATGATTTTGATATGTACTTGGATATTTTCTAGATATTAACTGAATGTCAAACAAGCCAGTGCATGCTTTTCTgcagaacaaataaaataaataaaaacattatctaACATTTGGGAATATATTTGTAACTGAATTGTGGCAGAACACTGCAATTGTCAGAGAGAGCTTTAATTGCTTTGTTGATAACGTCTTTACTATTAATTGTAGGAATCTGATTaaacagaatgagagaaagaaagctcTGTTTGTAGTGTGTTTAAACTTTCAGTCAGTAGTCAATgtagaaagaaacaaaaacagattgAGAAATGGAGTCCAAGGACCAGTCTCTGCTTCTCCAAAGCAGTAATATGTAACAAGCTCTGAATGGGACATTCTACAatgtgtaaaattgtaaaaccAGCTGTATTGGCAGATTACCTCTGTTAATTCTGAAAAGTCCAAAAGTTTACAAACATTCCACACCATTCTTGCTGATTCCCTTTGTCACAAAAccaaaaacagcttaaaaaaaaatacaatcttcaaaatggattatttttttcttccatcaAGTATGATAGAACACCTTGCCCGAGATGCAAGGCCTTGGCTGTGTTCCCAGTGGAGCGGAGCAAGCAGCGGGAAGAGCGGCCAGCTCTGAGCTGAACCAGGAGGACGCTTAAACATTGTCAACTTGCTTGTGAGAAGATGTGTAAACGTCACCTACTTGCCGAATGAACCGGTGTGAGAGATACAGGCAGGCTCGACTGAGTCTGTACAGTTTATACATTCCCCACGGTGGCTCTGAAGAGGATGCTGGGCGGGCCGGCTACTACTAAGCCCAGTTAAGATTAAAACCCTTTGAGAGCATGACTGACTCCAGGTCTTTGTCCTCTTCTTTTTCCCTGAGTCTCTGCTCCTCCAGGAGAGCCACTAAAGAGTCCCTTTGCTCCACCACCTCCAACATCTCATTGAGAATCTGCTTTTCCTCTGCCAGCTCAGTCTCCGTCTTCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU213914 lncRNA upstream 57207 12313716 ~ 12318215 (+) True G157798
TU213896 lncRNA upstream 777893 11594033 ~ 11597529 (+) True G157781
TU213897 lncRNA upstream 782431 11591964 ~ 11592991 (+) True G157782
TU213888 lncRNA upstream 859313 11515860 ~ 11516109 (+) True G157773
TU213886 lncRNA upstream 862901 11511985 ~ 11512521 (+) False G157771
TU213929 lncRNA downstream 1523 12379493 ~ 12384689 (+) True G157809
XR_002651241.1 lncRNA downstream 51798 12429768 ~ 12431720 (+) True LOC111194767
TU214070 lncRNA downstream 270018 12647988 ~ 12650184 (+) True G157903
TU214073 lncRNA downstream 277839 12655809 ~ 12661108 (+) True G157905
TU214079 lncRNA downstream 357662 12735632 ~ 12736988 (+) False hsbp1
XM_007250498.3 mRNA upstream 12895 12340006 ~ 12362527 (+) True LOC103031933
XM_022679616.1 mRNA upstream 41507 12031136 ~ 12333915 (+) False LOC103032257
XM_022679617.1 mRNA upstream 41507 12031588 ~ 12333915 (+) False LOC103032257
XM_007250499.3 mRNA upstream 41507 12219917 ~ 12333915 (+) True LOC103032257
XM_022679613.1 mRNA upstream 913777 11450922 ~ 11461645 (+) True LOC103046882
XM_007250504.3 mRNA downstream 137492 12515462 ~ 12524112 (+) True utp4
XM_007250514.3 mRNA downstream 357549 12735519 ~ 12741002 (+) True hsbp1
XM_007250515.3 mRNA downstream 405829 12783799 ~ 12800375 (+) True mlycd
XM_007250516.3 mRNA downstream 1240718 13618688 ~ 13647775 (+) True vps9d1
XM_007250519.3 mRNA downstream 1281960 13659930 ~ 13664333 (+) True spata2l
TU213920 other upstream 8652 12362451 ~ 12366770 (+) False LOC103031933
TU213377 other upstream 2433617 9940829 ~ 9941805 (+) True G157383
TU212948 other upstream 3804545 8569930 ~ 8570877 (+) True G157055
TU212659 other upstream 4768754 7600567 ~ 7606668 (+) True G156840
TU212490 other upstream 4970866 7387502 ~ 7404556 (+) False LOC111194759
TU214078 other downstream 357662 12735632 ~ 12740999 (+) False hsbp1
TU214177 other downstream 1355975 13733945 ~ 13736102 (+) True LOC107197649
TU214707 other downstream 2672252 15050222 ~ 15050718 (+) True G158369
TU214761 other downstream 2750398 15128368 ~ 15136198 (+) False LOC111194769
TU214762 other downstream 2750398 15128368 ~ 15136198 (+) False LOC111194769

Expression Profile