RNA id: TU214755


Basic Information

Item Value
RNA id TU214755
length 532
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G158417
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 15123138 ~ 15123669 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCTTTGTTCTGCCTCTGAGACTTCAGGTCCTCCTGAGCTCTGAAGATGTCGGACAGTGCTTGATGTTTTTCCCTCCAGTTCAGACACTCACTGATGCgctcctccttctctctgtccGCCAGCCTGCGCTCCTGATCAGCCTGCTGCTGCGCTTTCcctgctctctcactctgttcctcagcTGCTGCAGCCCTGCGCCTGGAGCTTGCctccctgcacacacacacacacacagctgcagctGTTACCTTCAGTCCACATCAAGAGTAAGacagcacacattcactaaaagaggaaaaaatgtcATCACTTTTCTTTAAGTTTTACATTCTCCTCCGTCAGCTCCTTCAGTCTGTGCCGCAGTGTGCTTCTCTCACTCTCCAGACtcttgttctcctccagcagaaACTGTTTCTCTCCAGACACTCTCTCTAGCTTTAGCTTCGTCTCAAAGTAGCTCTTCTCTGTCTGGGCCAGAAGCAGCTGTGCATTCGTGTGCTGTAAAACAATAGCAGTCTATAATCAGCTGAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU214719 lncRNA upstream 52729 15069786 ~ 15070409 (+) True G158381
TU214697 lncRNA upstream 115055 15007505 ~ 15008083 (+) True G158359
TU214690 lncRNA upstream 143046 14978743 ~ 14980092 (+) True G158357
TU214658 lncRNA upstream 203206 14910958 ~ 14919932 (+) True G158335
TU214518 lncRNA upstream 561007 14560650 ~ 14562131 (+) True G158238
TU214757 lncRNA downstream 1120 15124789 ~ 15124994 (+) True G158419
TU214769 lncRNA downstream 18503 15142172 ~ 15142472 (+) True G158429
XR_001518679.2 lncRNA downstream 79515 15203184 ~ 15213993 (+) True LOC107197619
TU214791 lncRNA downstream 123950 15247619 ~ 15249375 (+) True G158449
TU214811 lncRNA downstream 153954 15277623 ~ 15280021 (+) True G158467
XM_007249257.2 mRNA upstream 2833 15107363 ~ 15120305 (+) True LOC103031502
XM_022679648.1 mRNA upstream 292794 14818068 ~ 14830344 (+) True LOC103031823
XM_007249246.3 mRNA upstream 385411 14731792 ~ 14737727 (+) True nts
XM_007249249.3 mRNA upstream 479639 14636792 ~ 14643499 (+) True alx1
XM_022679646.1 mRNA upstream 490946 14588458 ~ 14632192 (+) True lrriq1
XM_022679650.1 mRNA downstream 10312 15133981 ~ 15137270 (+) True LOC111194769
XM_022679651.1 mRNA downstream 10313 15133982 ~ 15137270 (+) False LOC111194769
XM_022679652.1 mRNA downstream 10314 15133983 ~ 15137270 (+) False LOC111194769
XM_007249235.3 mRNA downstream 20403 15144072 ~ 15148635 (+) False LOC103024643
XM_007249236.3 mRNA downstream 20405 15144074 ~ 15148635 (+) True LOC103024643
TU214707 other upstream 72420 15050222 ~ 15050718 (+) True G158369
TU214177 other upstream 1387036 13733945 ~ 13736102 (+) True LOC107197649
TU214078 other upstream 2382139 12735632 ~ 12740999 (+) False hsbp1
TU213920 other upstream 2756368 12362451 ~ 12366770 (+) False LOC103031933
TU213377 other upstream 5181333 9940829 ~ 9941805 (+) True G157383
TU214761 other downstream 4699 15128368 ~ 15136198 (+) False LOC111194769
TU214762 other downstream 4699 15128368 ~ 15136198 (+) False LOC111194769
TU214760 other downstream 10278 15133947 ~ 15136198 (+) False LOC111194769
TU215237 other downstream 1255590 16379259 ~ 16379823 (+) True G158779
trnal-cag_11 other downstream 1639857 16763526 ~ 16763608 (+) True trnal-cag_11

Expression Profile