RNA id: XM_022679650.1


Basic Information

Item Value
RNA id XM_022679650.1
length 1764
RNA type mRNA
GC content 0.37
exon number 4
gene id LOC111194769
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 15128368 ~ 15137270 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTGTGAGGAAATACTGCTATTAAAAACAAAGTGCTATAGGAGTTTGTACAAgagtagaccacacaaaaacccagagtttatttcaaaattagttataaaagtggtagtttttattattataaagtttatatgtctgaaaataagaaaataaaatagaaaatctgaaaagcgcctgaAAATGTTCCGTTTTTTACTATATGTTCAACtgaataattaaagtgtcttaaattaattgtgtaaaggcttttaagtaatattaattcacagaattgactctgaattatttaatattggaaTGAAAAGCCTTCAAATCTAAGTATGTTATTTCAGgtggaaaatggtaaaaataggcttggagcttaagaggttaaTAAATAGCCAAAATAAACAGGTGCTCCTTCAAAAATCAAGCcctctttctttaattttaatccCATTATAATCCTAGTAAAGTGATCCaagtctgtctctttctctctcctctgcccTCTTGGTGATGTCACGTGAATGATTACCACCCACTGGCTGCATACCCAGTAGCAGGAAAGTTGATTGTGTCCCCCAGGACGTGCTTGTTGCATTGATGATAATGATTTGTGAAGAGTTCTTTCGTGTCACAACCTAGGATCTGTTGGGGACCTTTAGAGCAGCCTTGGATAAGTACTCTCCTCAACTGCTTAAACTGTACCGTGCAAGAAAGGGATCCTTCTGTCAAGACATGGACACCCTCTTTGAAAAGCTTGATGAAGAGGTAACCGAACCAGAGGCTGAGCAGACCAAAGGTGTCAAGATGGGTGTCCTCACTGTtcttgatgatgatgatgatgatgatgatgatgatgcaccTTCCTTGATGCCCACTGTCACAAGTATTGCCATTGTGCTGGAAGTGGCTATTGTTCTCACAGATGTACCAGACCTTCCTACTGCCTTTGCCTACCTTTTCGGCCTGCTCTATTCCTTGAACATGGAGTTTCCAAAAGAACACATGTATACTTTTGAAACTATTCAGCACATCTTCATGGAATTGACCCCTACTTGCTCTCAGCGTGTCAGGAGCTTACAAACCAAGCTCCTTCTCTAAATTAGAAACTGATCTTTTACATACACTTTGCTGGTTGGCCTAATCCGTCTGTCTGAAATGTCAAGACATTTTTGGCTTTACAGGTTGTAaaggaatttttttttctgcattggcCCCAATGTTCAGGGCTTTATCCAGTGGGTTTTCaacctttttgttttattctttacattGCTGATATCCATTTGAATGGATTAAAGGAGCTACAAAAATGTTCTAAAGCCAAAGAGCTGTTTTCTTGCCAAGGGTTGGTTTAGTTGTTTCCTTTATGCCTTACATAAAGCATAGCTCACGGTTCTACAGCAGCAGTCTGCAGATGTTTTTTGAATGATTAGGTGCTGTATCTCAAAGAGATTTTTATAAGATTAAGGCAGAGTAATAGATCCATTTTTTATAGAGAAGGATGTGGCAGAAAGAGCTGGGCAGTGATGTGCTTAGAGTgtacagaaatggcacccaCTTTTTGCAAACAAGCACAACTTGTGTAGTGAATCTAAATCTTgctattgtgtttgttttttttttttttttttttttttatatattttataaatgctATACAGCAGCACTTTGTTCCTTGCATTGTTAAGTCAGGAGTTTTTATCAGCCTGCTTGGTGGACATTCTTGCAACTTGAAATTACTTGTTGCagaaagggttaataaacatgTTAACTTAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU214757 lncRNA upstream 8987 15124789 ~ 15124994 (+) True G158419
TU214755 lncRNA upstream 10312 15123138 ~ 15123669 (+) True G158417
TU214719 lncRNA upstream 63572 15069786 ~ 15070409 (+) True G158381
TU214697 lncRNA upstream 125898 15007505 ~ 15008083 (+) True G158359
TU214690 lncRNA upstream 153889 14978743 ~ 14980092 (+) True G158357
TU214769 lncRNA downstream 4902 15142172 ~ 15142472 (+) True G158429
XR_001518679.2 lncRNA downstream 65914 15203184 ~ 15213993 (+) True LOC107197619
TU214791 lncRNA downstream 110349 15247619 ~ 15249375 (+) True G158449
TU214811 lncRNA downstream 140353 15277623 ~ 15280021 (+) True G158467
TU214817 lncRNA downstream 147634 15284904 ~ 15289711 (+) True G158472
XM_007249257.2 mRNA upstream 13676 15107363 ~ 15120305 (+) True LOC103031502
XM_022679648.1 mRNA upstream 303637 14818068 ~ 14830344 (+) True LOC103031823
XM_007249246.3 mRNA upstream 396254 14731792 ~ 14737727 (+) True nts
XM_007249249.3 mRNA upstream 490482 14636792 ~ 14643499 (+) True alx1
XM_022679646.1 mRNA upstream 501789 14588458 ~ 14632192 (+) True lrriq1
XM_007249235.3 mRNA downstream 6802 15144072 ~ 15148635 (+) False LOC103024643
XM_007249236.3 mRNA downstream 6804 15144074 ~ 15148635 (+) True LOC103024643
XM_007249238.3 mRNA downstream 12781 15150051 ~ 15155609 (+) True rnf141
XM_007249239.2 mRNA downstream 14509 15151779 ~ 15155609 (+) False rnf141
XM_007249226.3 mRNA downstream 161675 15298945 ~ 15304011 (+) True nrip3
TU214707 other upstream 83263 15050222 ~ 15050718 (+) True G158369
TU214177 other upstream 1397879 13733945 ~ 13736102 (+) True LOC107197649
TU214078 other upstream 2392982 12735632 ~ 12740999 (+) False hsbp1
TU213920 other upstream 2767211 12362451 ~ 12366770 (+) False LOC103031933
TU213377 other upstream 5192176 9940829 ~ 9941805 (+) True G157383
TU215237 other downstream 1241989 16379259 ~ 16379823 (+) True G158779
trnal-cag_11 other downstream 1626256 16763526 ~ 16763608 (+) True trnal-cag_11
XR_002651250.1 other downstream 2040405 17177675 ~ 17189251 (+) False zwilch
XR_002651251.1 other downstream 2040405 17177675 ~ 17189251 (+) True zwilch
TU215929 other downstream 3389116 18526386 ~ 18576437 (+) True necab2

Expression Profile