RNA id: TU214946


Basic Information

Item Value
RNA id TU214946
length 2177
lncRNA type inter_gene
GC content 0.49
exon number 7
gene id G158565
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 15452216 ~ 15461006 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GAAGCTTTTCTGTCACAAAAAGCGAGACGGAATTCTTCCTTATCGCTGAGTGTCCCAACGACAGCCTCTCACACTCAACTAAAAATGagggacaaaataaaatacattatttaaggtgAAGAGCTAGGGgagccaaaaaaacaaaacaaaacaaaacaaaaaaaataaatgcagataTTATAAAAGCAATACTTCACATCAGTTTCATTTGTTCTCGAGATTCATACACTTTGAGAGACAGGTGGTTTTTGTCATCAGGTTAACAATATTTGTACATGGCGAGACACAGTCAGGAAATGCTGAACATACAGAACTCGACAAAGAGCTCACTGGGCGAGAATGGACCACAGTAAAGCTGAGGTCCGAGTAGAGCAGTTTCTACCTATGAGTCCAGGATGGTCAAAACGTAGAGTGATCTGTAGCCTCATGTCAGAATGGCAGAGCAAAATACAGGCTATGAATGAAATAATGGCAAGTGGGCAGAGAAGAAAAATtgaagcaaaagagagaaagctttatatatataaaaaaaaagaagtgtacTTGTTCTTCTGCCTAGAGACACTACAGTAAAGATTCCATCTTGTTGCAAAAACAGACGAGCTGTGTCCAACTGTCACCCCACTACTGTGCTGCAATATAAAACCTAGACCTCCTCTCTACCTCTGACGTGAAATCCACGTCCAGAGTACCCTCTGTGTTCTTGGGTGACCCATGAGAGGTCTGGCCTTTTGTTTATTTCCCAGGGATCTTCGCTCTCTTGCGGGCAATGGCATCTTCCACAGCCTTAAGCTGCTTCAGCAGCTCCTCGCGGCGGGACAGTGTGCTGCTGGGTTTTCCTGAGCCAGATCCAGCGCCAGAAGCAGAACCGGAGCCTGGGACGGGAGCAGCGGGCTTGGCTGTAGAGACTGCAGGGCCTTTCCCAGTAGACTTGGGTGGCGGAGACAGAGGACGCTtCTCTCTCCTGGAGTGGGCATGGGCCGTGGTCCCTGGCCTCTAGGCCGATCCATTCTCGGTGAGAGTGGTGGGCGTCCGGGCATCCTGCGGTCACGACCTCTTTCAGGAGACAACGCTATCCTCTTGCTGACAGGGGATGTTGGTCTCTCTTTGTCTGCAGGGAAGTACCtcttcctattacttttgtctGCCTGCTTGTTAAGTAGAGTGAGTTTGATGTCTTTATGTGATCCATAAGCCCCTGGAGGACCCGCAGGTGGTGCATTCATGGGGTGTCCCCGGTTTCCAGTGCCAGACCTCGGCGCTCCAGGGTCAGATTTAGGTGGAAGGTCAGAGGGGTCAACCCTTTTCCTCTCCTCTTTAAAAGTCTCGTCTTTCTTTGGGATTTTTCCTCTGTCTTTGTCAGGATCCCGCTCACGTGGGGGTGGGCGGTCACGAGGGGGCCCACGCTCTTTGCGTGCATGGCCTGGTGTAGGTGAGTGAGAGCTGGCTGAGGAGACAGGGCTGGCTAAGTCAGCGTACATATCATCAGAGTCTGCGCTCCGTactgagctgctgctggaggaagCTGACGACACTGATGACACACTGCTCACTGACAGAGACCTGGATTTACGGGATCCAGTtcgggagcgagagagagaggcagaggatGATCGAGATCTGGAGCGTGAACTGGTACCAGTAAAACTGCTGCCACTGCCACTCACACTGCCACTTAGTGTCCTcCTGCGAGGATTGTGaggatggcgctctttcttgcGGCCCTCCCTCACATTGGTGGGTTTTCCTGGTTCACGGGGTGGAGGTGGTCTGCCTCCCTCACGGATGTTGGGGGGTTTAGATCCCTCTGCAAATGGTTTTGGGGGTTTGCCTGGCTGGCCCGGCTGCGCGGGACTGGGGACCTTCTTGGGGGGCCCTTTATCTCTGCGAGGAGGCGGAGGAGGCTGCACACCAGGCTTCAGTAGATGACTTGTGAAGGAGAacacacttttattattaaattattaaagagacacacacactcaaacacaagcACAAGCAAGCACACAATTCAGCAGAACAGCTTGTTTAGGAGTGGAATTATTCTTCAATAACTAATTTGATGTTTCTTTTAGTTTGACACTTGAGTTTTAACTGCGTTTTGGGCAGGGATTTTAATTGTTTCATTTGTTGTTACGGTAGCATATTTTGGCTCAGATTCAAGTATGTTAAGTATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU214935 lncRNA upstream 59051 15391659 ~ 15393165 (+) True G158555
TU214842 lncRNA upstream 85094 15363757 ~ 15367122 (+) True G158486
TU214828 lncRNA upstream 132531 15315957 ~ 15319685 (+) True G158477
TU214824 lncRNA upstream 136664 15312020 ~ 15315552 (+) False c18h11orf16
TU214823 lncRNA upstream 146753 15304809 ~ 15305463 (+) True G158475
TU214962 lncRNA downstream 43256 15503526 ~ 15504044 (+) True G158576
TU214966 lncRNA downstream 111264 15571534 ~ 15572338 (+) True G158580
TU214970 lncRNA downstream 123171 15583441 ~ 15584994 (+) True G158582
TU214971 lncRNA downstream 123322 15583592 ~ 15584994 (+) False G158582
TU214972 lncRNA downstream 123396 15583666 ~ 15584994 (+) False G158582
XM_007249216.3 mRNA upstream 76052 15373349 ~ 15376164 (+) True chtf8
XM_007249220.3 mRNA upstream 105107 15342494 ~ 15347109 (+) True LOC103046975
XM_022679422.1 mRNA upstream 117214 15333873 ~ 15335002 (+) True LOC111194727
XM_015605785.2 mRNA upstream 120886 15321270 ~ 15331330 (+) True LOC103021723
XM_022679655.1 mRNA downstream 22174 15482444 ~ 15501213 (+) True LOC103031192
XM_007249208.2 mRNA downstream 218453 15678723 ~ 15688714 (+) True LOC103043506
XM_007249206.3 mRNA downstream 231233 15691503 ~ 15717211 (+) True kiaa0513
XM_007249207.3 mRNA downstream 231235 15691505 ~ 15717211 (+) False kiaa0513
XM_007249203.3 mRNA downstream 277718 15737988 ~ 15750462 (+) True c18h16orf70
TU214761 other upstream 316018 15128368 ~ 15136198 (+) False LOC111194769
TU214762 other upstream 316018 15128368 ~ 15136198 (+) False LOC111194769
TU214760 other upstream 316018 15133947 ~ 15136198 (+) False LOC111194769
TU214707 other upstream 401498 15050222 ~ 15050718 (+) True G158369
TU214177 other upstream 1716114 13733945 ~ 13736102 (+) True LOC107197649
TU215237 other downstream 918989 16379259 ~ 16379823 (+) True G158779
trnal-cag_11 other downstream 1303256 16763526 ~ 16763608 (+) True trnal-cag_11
XR_002651250.1 other downstream 1717405 17177675 ~ 17189251 (+) False zwilch
XR_002651251.1 other downstream 1717405 17177675 ~ 17189251 (+) True zwilch
TU215929 other downstream 3066116 18526386 ~ 18576437 (+) True necab2

Expression Profile