RNA id: TU214966


Basic Information

Item Value
RNA id TU214966
length 805
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G158580
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 15571534 ~ 15572338 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cgcgggattaaaagaagcaatttttttgcggagcggtaacgagacagaaacgcgggagcgtggaagagtgggtttaaaaatcagtctcgcgcagacctctattatacatgataaaaaaaaatgcaggctcttcgaaactgatttatataataaaacgtaaggggtaatgtggcaacagtaggggctaaatcggttacaaaagcctggcctacaaaaatgatgtctgaacgaatttcctcttatctaatataatttaaaatggtttaaaaatataaaataatttctaagcaaacgaaatatttaatattgagcttatagcccaagtgcaaaaatacaaaatcagtaatacggctatgccctgcaacaatccttaaaccgaaatagaccaagtacaataacgtcattaacaatgactttcctctactctaatataatttaacatggtttaaaaatataaaataatttctaaacaaacgaaatatttaatattgagcttatagcccaagtgcaaaaatacaaaatcagtaatatgccctgcacaatcctttaaccgaaatagaccaagtacagtttacaatgactgtcctctaatataatcaacaatgtttaagaatataaaatacttcctgaacaaacgtttttttttttgtttgtttttttaagcaaatagcctaagtgtgaaaacacaaacagcaatttactgggctggcttgcgcagcggagaaaccgtgcagcagcagcctcctagcctgcttacgcagcggataagccgcggtgtagggcagcagaaattccgggatgaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU214962 lncRNA upstream 67490 15503526 ~ 15504044 (+) True G158576
TU214948 lncRNA upstream 110528 15456173 ~ 15461006 (+) False G158565
TU214946 lncRNA upstream 111264 15452216 ~ 15460270 (+) True G158565
TU214947 lncRNA upstream 115729 15452216 ~ 15455805 (+) False G158565
TU214935 lncRNA upstream 178369 15391659 ~ 15393165 (+) True G158555
TU214970 lncRNA downstream 11103 15583441 ~ 15584994 (+) True G158582
TU214971 lncRNA downstream 11254 15583592 ~ 15584994 (+) False G158582
TU214972 lncRNA downstream 11328 15583666 ~ 15584994 (+) False G158582
TU215025 lncRNA downstream 195729 15768067 ~ 15768658 (+) False LOC103041858
TU215024 lncRNA downstream 198957 15771295 ~ 15771945 (+) True LOC107197617
XM_022679655.1 mRNA upstream 70321 15482444 ~ 15501213 (+) True LOC103031192
XM_007249216.3 mRNA upstream 195370 15373349 ~ 15376164 (+) True chtf8
XM_007249220.3 mRNA upstream 224425 15342494 ~ 15347109 (+) True LOC103046975
XM_022679422.1 mRNA upstream 236532 15333873 ~ 15335002 (+) True LOC111194727
XM_007249225.3 mRNA upstream 240204 15321271 ~ 15331330 (+) False LOC103021723
XM_007249208.2 mRNA downstream 106385 15678723 ~ 15688714 (+) True LOC103043506
XM_007249206.3 mRNA downstream 119165 15691503 ~ 15717211 (+) True kiaa0513
XM_007249207.3 mRNA downstream 119167 15691505 ~ 15717211 (+) False kiaa0513
XM_007249203.3 mRNA downstream 165650 15737988 ~ 15750462 (+) True c18h16orf70
XM_007249204.3 mRNA downstream 165650 15737988 ~ 15750462 (+) False c18h16orf70
TU214761 other upstream 435336 15128368 ~ 15136198 (+) False LOC111194769
TU214762 other upstream 435336 15128368 ~ 15136198 (+) False LOC111194769
TU214760 other upstream 435336 15133947 ~ 15136198 (+) False LOC111194769
TU214707 other upstream 520816 15050222 ~ 15050718 (+) True G158369
TU214177 other upstream 1835432 13733945 ~ 13736102 (+) True LOC107197649
TU215237 other downstream 806921 16379259 ~ 16379823 (+) True G158779
trnal-cag_11 other downstream 1191188 16763526 ~ 16763608 (+) True trnal-cag_11
XR_002651250.1 other downstream 1605337 17177675 ~ 17189251 (+) False zwilch
XR_002651251.1 other downstream 1605337 17177675 ~ 17189251 (+) True zwilch
TU215929 other downstream 2954048 18526386 ~ 18576437 (+) True necab2

Expression Profile