RNA id: XM_015605776.2



Basic Information


Item Value
RNA id XM_015605776.2
length 390
RNA type mRNA
GC content 0.45
exon number 3
gene id LOC107197617
representative False

Chromosome Information


Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 15771295 ~ 15771945 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


TCAATCACCAAACACATTCAGCCTTCACTCACCAAAATAACTTTTTGTGAGATAGTTCTAAAGCTGAAACAAACACCATTGATAAAATGGATCCCTGTGACTGCGCCAAGACCGGAAGCTGCAACTGTGGTGCAAGCTGCAAATGCACAAACTGCCAGTGTACAACATGCCAGAAAAGCTGCTGCCCATGCTGTCCGTCTGGCTGCAGCAAGTGTGCTTCTGGATGTGTGTGCAAAGGCAATGCCTGTGGCTCCAGTTGCTGCCAGTGAAGACAGGACTGTCCCTGCCAATCAGGATGTACAGTTTTTGAATTGCCATTGTACCATGTAATTTCTAATGGAGTGTCTGTCTTTTATAGGAAATGTCAATAAATAACTCCACTGTACCTGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU215025 lncRNA upstream 2677 15768067 ~ 15768658 (+) False LOC103041858
TU214970 lncRNA upstream 186341 15583441 ~ 15584994 (+) True G158582
TU214971 lncRNA upstream 186341 15583592 ~ 15584994 (+) False G158582
TU214972 lncRNA upstream 186341 15583666 ~ 15584994 (+) False G158582
TU214966 lncRNA upstream 198997 15571534 ~ 15572338 (+) True G158580
TU215026 lncRNA downstream 281 15772226 ~ 15772440 (+) True G158624
TU215023 lncRNA downstream 3479 15775424 ~ 15776158 (+) True LOC103041352
TU215029 lncRNA downstream 35374 15807319 ~ 15807533 (+) True G158627
TU215045 lncRNA downstream 135208 15907153 ~ 15907900 (+) True G158640
TU215046 lncRNA downstream 137058 15909003 ~ 15909291 (+) True G158641
XM_007249202.3 mRNA upstream 2674 15768055 ~ 15768661 (+) True LOC103041858
XM_007249203.3 mRNA upstream 20873 15737988 ~ 15750462 (+) True c18h16orf70
XM_007249204.3 mRNA upstream 20873 15737988 ~ 15750462 (+) False c18h16orf70
XM_007249206.3 mRNA upstream 54124 15691503 ~ 15717211 (+) True kiaa0513
XM_007249207.3 mRNA upstream 54124 15691505 ~ 15717211 (+) False kiaa0513
XM_007249200.3 mRNA downstream 3497 15775442 ~ 15776166 (+) False LOC103041352
XM_015605796.2 mRNA downstream 5780 15777725 ~ 15804576 (+) True nup93
XM_007249199.3 mRNA downstream 5780 15777725 ~ 15804576 (+) False nup93
XM_015605797.2 mRNA downstream 16892 15788837 ~ 15804576 (+) False nup93
XM_007249198.3 mRNA downstream 36244 15808189 ~ 15822339 (+) True slc12a3
TU214761 other upstream 635137 15128368 ~ 15136198 (+) False LOC111194769
TU214762 other upstream 635137 15128368 ~ 15136198 (+) False LOC111194769
TU214760 other upstream 635137 15133947 ~ 15136198 (+) False LOC111194769
TU214707 other upstream 720617 15050222 ~ 15050718 (+) True G158369
TU214177 other upstream 2035233 13733945 ~ 13736102 (+) True LOC107197649
TU215237 other downstream 607314 16379259 ~ 16379823 (+) True G158779
trnal-cag_11 other downstream 991581 16763526 ~ 16763608 (+) True trnal-cag_11
XR_002651250.1 other downstream 1405730 17177675 ~ 17189251 (+) False zwilch
XR_002651251.1 other downstream 1405730 17177675 ~ 17189251 (+) True zwilch
TU215929 other downstream 2754441 18526386 ~ 18576437 (+) True necab2

Expression Profile