RNA id: TU215049


Basic Information

Item Value
RNA id TU215049
length 448
lncRNA type inter_gene
GC content 0.50
exon number 4
gene id G158644
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 15936078 ~ 15942262 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCGCCGTTTAACTGCCCCGGCAAGTAGGTGCGCCTGAGACAAGTGGCTTGTCTTGTGTTCAGGGGGTTTGGGTCCTGCCCTTTTCTCCGGTTCCTTCTTCTGGCTCTCACTGGCTGCCAGCTTCTTCAGAGCACTCCTATATTCCTGGATCTCTTGGTGGTCCTCATCTCTCCTTTGTTTCTCAACAAGAGATTGCTGCCGTGAAACTTCATCCAGAAAGTTAGTCTCATCCTCATCCAGGCCTTTCACCATGTTCTTAAATTTAAATTGCTCCTCATACTCCTCCTGCTTCTTATCCTTCTGCTCCTGCAGTCTCTCGAACAGCGAGCGGGGATCATACTCTTCCTCTGGGACCTCTTCAGGATCATCTGGCATGCGAACCTTTTCCCATTCCTCCTGAcgtttcttcctcttctcttccaACTCAGACTCTGAAACAAACTTCCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU215046 lncRNA upstream 26787 15909003 ~ 15909291 (+) True G158641
TU215045 lncRNA upstream 28178 15907153 ~ 15907900 (+) True G158640
TU215029 lncRNA upstream 128545 15807319 ~ 15807533 (+) True G158627
TU215023 lncRNA upstream 159920 15775424 ~ 15776158 (+) True LOC103041352
TU215026 lncRNA upstream 163638 15772226 ~ 15772440 (+) True G158624
XR_002651245.1 lncRNA downstream 27024 15969286 ~ 15986748 (+) False LOC111194770
XR_002651246.1 lncRNA downstream 27024 15969286 ~ 15986748 (+) False LOC111194770
XR_002651248.1 lncRNA downstream 27024 15969286 ~ 15986748 (+) False LOC111194770
XR_002651247.1 lncRNA downstream 27136 15969398 ~ 15986748 (+) False LOC111194770
XR_002651244.1 lncRNA downstream 27232 15969494 ~ 15986748 (+) True LOC111194770
XM_007249195.3 mRNA upstream 3612 15878898 ~ 15932466 (+) True cpne2
XM_022679657.1 mRNA upstream 60843 15851856 ~ 15875235 (+) True nlrc5
XM_022679658.1 mRNA upstream 60843 15851856 ~ 15875235 (+) False nlrc5
XM_007249197.3 mRNA upstream 89388 15833153 ~ 15846690 (+) True cetp
XM_007249196.3 mRNA upstream 103038 15823719 ~ 15833040 (+) True herpud1
XM_007249192.3 mRNA downstream 5324 15947586 ~ 15959406 (+) True rspry1
XM_007249189.3 mRNA downstream 17887 15960149 ~ 15968090 (+) True LOC103038143
XM_007249190.3 mRNA downstream 17887 15960149 ~ 15968090 (+) False LOC103038143
XM_022679660.1 mRNA downstream 18336 15960598 ~ 15968090 (+) False LOC103038143
XM_022679976.1 mRNA downstream 293918 16236180 ~ 16236963 (+) True LOC111194834
TU214761 other upstream 799880 15128368 ~ 15136198 (+) False LOC111194769
TU214762 other upstream 799880 15128368 ~ 15136198 (+) False LOC111194769
TU214760 other upstream 799880 15133947 ~ 15136198 (+) False LOC111194769
TU214707 other upstream 885360 15050222 ~ 15050718 (+) True G158369
TU214177 other upstream 2199976 13733945 ~ 13736102 (+) True LOC107197649
TU215237 other downstream 436997 16379259 ~ 16379823 (+) True G158779
trnal-cag_11 other downstream 821264 16763526 ~ 16763608 (+) True trnal-cag_11
XR_002651250.1 other downstream 1235413 17177675 ~ 17189251 (+) False zwilch
XR_002651251.1 other downstream 1235413 17177675 ~ 17189251 (+) True zwilch
TU215929 other downstream 2584124 18526386 ~ 18576437 (+) True necab2

Expression Profile