RNA id: TU215066


Basic Information

Item Value
RNA id TU215066
length 344
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G158652
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 15979026 ~ 15979369 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttgttaatgacgttattgtacttggtctatttcggtttaaggattgtgcagggcatattactgattttgtatttttgcacttgggctataagatcaatattaaatattttgtttgcttagaaattattttatatttttaaaccattttaaattatattagataagaggaaatccgttcagacatcatttttgtaggccaggcttttgtaaccgatttagcccctactgttgccacattaccccttacgttttattatataaatcagttttgaagagtctgcatttttttttatcatgtataatagaggtctgcgcgagactgatttttaaacccactcttccac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU215060 lncRNA upstream 80 15976852 ~ 15978946 (+) True G158651
TU215065 lncRNA upstream 526 15976852 ~ 15978500 (+) False G158651
TU215061 lncRNA upstream 607 15976852 ~ 15978419 (+) False G158651
TU215049 lncRNA upstream 36764 15936078 ~ 15942262 (+) True G158644
TU215046 lncRNA upstream 69735 15909003 ~ 15909291 (+) True G158641
TU215234 lncRNA downstream 311407 16290776 ~ 16291007 (+) True G158776
TU215247 lncRNA downstream 563509 16542878 ~ 16561010 (+) False siah1
TU215250 lncRNA downstream 595315 16574684 ~ 16575374 (+) True G158786
TU215262 lncRNA downstream 608558 16587927 ~ 16588472 (+) True G158793
TU215287 lncRNA downstream 674767 16654136 ~ 16725205 (+) False st3gal2
XM_007249189.3 mRNA upstream 10936 15960149 ~ 15968090 (+) True LOC103038143
XM_007249190.3 mRNA upstream 10936 15960149 ~ 15968090 (+) False LOC103038143
XM_022679660.1 mRNA upstream 10936 15960598 ~ 15968090 (+) False LOC103038143
XM_007249192.3 mRNA upstream 19620 15947586 ~ 15959406 (+) True rspry1
XM_007249195.3 mRNA upstream 46560 15878898 ~ 15932466 (+) True cpne2
XM_022679976.1 mRNA downstream 256811 16236180 ~ 16236963 (+) True LOC111194834
XM_007249185.3 mRNA downstream 295310 16274679 ~ 16285044 (+) True cbln1
XM_015604415.2 mRNA downstream 527527 16506896 ~ 16511309 (+) True LOC107197482
XM_007249184.3 mRNA downstream 532965 16512334 ~ 16530595 (+) True n4bp1
XM_007249183.2 mRNA downstream 563525 16542894 ~ 16571458 (+) False siah1
TU214761 other upstream 842828 15128368 ~ 15136198 (+) False LOC111194769
TU214762 other upstream 842828 15128368 ~ 15136198 (+) False LOC111194769
TU214760 other upstream 842828 15133947 ~ 15136198 (+) False LOC111194769
TU214707 other upstream 928308 15050222 ~ 15050718 (+) True G158369
TU214177 other upstream 2242924 13733945 ~ 13736102 (+) True LOC107197649
TU215237 other downstream 399890 16379259 ~ 16379823 (+) True G158779
trnal-cag_11 other downstream 784157 16763526 ~ 16763608 (+) True trnal-cag_11
XR_002651250.1 other downstream 1198306 17177675 ~ 17189251 (+) False zwilch
XR_002651251.1 other downstream 1198306 17177675 ~ 17189251 (+) True zwilch
TU215929 other downstream 2547017 18526386 ~ 18576437 (+) True necab2

Expression Profile