RNA id: TU215234


Basic Information

Item Value
RNA id TU215234
length 232
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G158776
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 16290776 ~ 16291007 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATTTTTGTCTAATTTAGCCTGATTGAATTTTAATTGGAGTTTTGAGGAGCAGCACTAGTGTTGGTTGCTGTAACTGCAACAATGCAGGAGTGGGGTAATTATGACAGCTCTTAACTCAACGAGCCGCCCGCTGAATACAgattgatttaatttgatttgacaTCACTTGCAATACTTCCCCTCCCACCCTGATTCTGGTAAACTCACCCCCCTGCTGTGAAATTTATGGCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002651245.1 lncRNA upstream 304028 15969286 ~ 15986748 (+) False LOC111194770
XR_002651246.1 lncRNA upstream 304028 15969286 ~ 15986748 (+) False LOC111194770
XR_002651248.1 lncRNA upstream 304028 15969286 ~ 15986748 (+) False LOC111194770
XR_002651247.1 lncRNA upstream 304028 15969398 ~ 15986748 (+) False LOC111194770
XR_002651244.1 lncRNA upstream 304028 15969494 ~ 15986748 (+) True LOC111194770
TU215247 lncRNA downstream 251871 16542878 ~ 16561010 (+) False siah1
TU215250 lncRNA downstream 283677 16574684 ~ 16575374 (+) True G158786
TU215262 lncRNA downstream 296920 16587927 ~ 16588472 (+) True G158793
TU215287 lncRNA downstream 363129 16654136 ~ 16725205 (+) False st3gal2
TU215301 lncRNA downstream 437449 16728456 ~ 16730115 (+) True G158823
XM_007249185.3 mRNA upstream 5732 16274679 ~ 16285044 (+) True cbln1
XM_022679976.1 mRNA upstream 53813 16236180 ~ 16236963 (+) True LOC111194834
XM_007249189.3 mRNA upstream 322686 15960149 ~ 15968090 (+) True LOC103038143
XM_007249190.3 mRNA upstream 322686 15960149 ~ 15968090 (+) False LOC103038143
XM_022679660.1 mRNA upstream 322686 15960598 ~ 15968090 (+) False LOC103038143
XM_015604415.2 mRNA downstream 215889 16506896 ~ 16511309 (+) True LOC107197482
XM_007249184.3 mRNA downstream 221327 16512334 ~ 16530595 (+) True n4bp1
XM_007249183.2 mRNA downstream 251887 16542894 ~ 16571458 (+) False siah1
XM_007249181.3 mRNA downstream 267035 16558042 ~ 16571458 (+) True siah1
XM_007249182.3 mRNA downstream 267035 16558042 ~ 16571458 (+) False siah1
TU214761 other upstream 1154578 15128368 ~ 15136198 (+) False LOC111194769
TU214762 other upstream 1154578 15128368 ~ 15136198 (+) False LOC111194769
TU214760 other upstream 1154578 15133947 ~ 15136198 (+) False LOC111194769
TU214707 other upstream 1240058 15050222 ~ 15050718 (+) True G158369
TU214177 other upstream 2554674 13733945 ~ 13736102 (+) True LOC107197649
TU215237 other downstream 88252 16379259 ~ 16379823 (+) True G158779
trnal-cag_11 other downstream 472519 16763526 ~ 16763608 (+) True trnal-cag_11
XR_002651250.1 other downstream 886668 17177675 ~ 17189251 (+) False zwilch
XR_002651251.1 other downstream 886668 17177675 ~ 17189251 (+) True zwilch
TU215929 other downstream 2235379 18526386 ~ 18576437 (+) True necab2

Expression Profile