RNA id: XM_007249181.3


Basic Information

Item Value
RNA id XM_007249181.3
length 3039
RNA type mRNA
GC content 0.48
exon number 4
gene id siah1
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 16542878 ~ 16571458 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tgtgtgtgtgtgtatgtgagtgtgtttcCTGGGTTGCACTCtaaagaggatttttttttctcaccccCTCTGTAAGACTCCTGTAAGTCTCCTGCACAGTGGTCAGTGTACAATCACTTGGATTATTTGTGTGCCTGTGAGTATATGAGAGAAACTGTGTAAGTGGTCAGTCAGGCCTCTGTGCACCCTCTGTCCTTCATGTGTTCAGGGGGTCTCCATGAGTGGACCTAACACCTAACAACCATTTGGAGGAGTATTTTCAGCTGGCCTTGTGttgggagggagagaggaagcAGTTTCAGAGACTGGACTGAAGGGGCCCTCTGTTATGGGCTGTTTTGTTTCTATGGAAGGAGCGCAATGAAGAGTCCCTCAGCTCCCCATGTCGCCCACTGTTAGGCTGCAGCCCGTCTACTCATGGAAGGGGGTTCTCAAGCTCTTCACATGCATAGCTGCCCGAACGGCCAGCAAGCCTAAAGATGGTACACTAGAGCACCATACACtagagcaccagcatctcagacCAAAACAAGTATCTCTGGaggtcCACACATTTCAAGAGAAGAAGATAGCCTTACTTGGGAATCATATGGACGAAGAAATGAGTCGCCAGACCGCCACAGCGCTGCCCACAGGAACCTCCAAGTGTGCCCCCTCTCAGCGCGTCCCCACCCTGTCCGGCACCACCGCCTCCAACAGTGACCTGGCCAGCCTGTTCGAGTGCCCCGTGTGCTTCGACTATGTGCTGCCCCCCATCCTGCAGTGCCAGAGCGGCCACCTGGTGTGCAGCAACTGCCGGCCCAAGCTCACCTGCTGCCCCACCTGCAGGGGCCCCCTGGGCTCCATCCGCAACCTGGCCATGGAGAAGGTGGCCAATTCGGTCCTGTTCCCCTGCAAGTACGCCTCGTCCGGCTGCGAGGTGACCCTGCCTCACACAGACAAGGCCGAGCACGAGGAGCTGTGCGAGTTCCGGCCGTACTCGTGCCCCTGCCCCGGCGCCTCCTGCAAGTGGCAGGGCTCGCTCGATGCAGTCATGCCTCACCTCCTGCACCAGCACAAATCCATCACCACGCTGCAGGGCGAGGACATCGTTTTCCTGGCCACGGACATCAACCTCCCCGGAGCCGTGGACTGGGTCATGATGCAATCCTGCTTCGGCTTTCACTTCATGCTGGTGCTGGAGAAGCAGGAAAAGTACGACGGTCACCAGCAGTTCTTCGCCATCGTGCAGCTGATCGGCACAAGGAAGCAAGCCGAGAACTTTGCTTACAGGCTGGAGCTAAACGGCCACAGGCGGCGGCTCACCTGGGAGGCCACGCCGCGTTCCATTCACGAGGGCATCGCCACCGCCATCATGAACAGTGACTGTCTGGTATTCGACACCTCTATCGCCCAGCTGTTTGCTGAGAACGGCAACCTGGGCATCAACGTCACCATATCCATGTGCTGAGGACCGTCACAGACACACGCACTAGCGTGtgctcacacagacacacacacagacacaaaaacacacacacacacacacaaaaacaggcataagcatacagtaaaaaaaacatacatttcacaccaccaccatggGACACCTTGAGTTGTACTTTGGGTCAGGGAGGGGGGAGATATCTAACCGAGGGAACTTTTTCGCTGTTGTACGTTCCAAGCAAATGATAGAACTGACGTTTATCAGTTAAAAGCTTGGCACGCCCAACCGGATATTATTCCTGGGTTTTCAATTTTAtgctacattattattattgttattattgttattattattatatataagttaAACGATAAAAGTAATGTATTCTACATTTTTGAGAGCAAATGGCATTGCCCTCAAAGGTGAAAAAGGGCCTTGTGAAGCGGACTTGCGCACATGTGGCTTTGTTGGTGAAAATGAATGGTGATAGAATGGTGCAGTAGAATGGAGGGTTGGGGGGTTTTGGGATAGGTTCTGTGGTGGGGTTCActcaaaaagataaaataaaaataaaataaatttaaattaattcctAAATATTGGTTACTGCCCACCCCCACCCCTCGTTTTCTtcacccctcccctccccccgCACTCACATGTTGGAATTTTAGTTCAAATGAAACACTAACTTCCAAGTTGAGTTTCTGCTGTTGTAGAATTTATTCAAGTTTCGTTGTTTCCTTTGACCCCTCACCCTTGGGAAGGACGTAGATGCTGATACACGGGCTGAGACTTGATGCATCCAGATTTCATTTGCAAATCTGTATTGTTCCAAcactactgcagtgtttttttttttttttttttcttctcttttcctttcaaggtttttctttctttcttctctgtaGGAAGGGGTCTCGGGAGGGTCCATCAGATTGTGTGTGGACCTGGTGTGACCACATCAGGCTTGAAGCCCCTCAAACATCACCCTGTCCCTCTTAGGTTTCTAGCTTAATCTCCAATAGCCTCCTCTTTTTCAGATCAGGTGCTCTTAAACAGCAGTCACGCGCCTGTGAATGTTGAGTCATTGTactgaaattaaatgaaatccAGTTAACAGAATGGATTTTGCTTCCGTTTTACAGCATGTATGAGTCCAGGCCGCTGTAAGGTATAGACATGTTGTCTGGAAATCGTGAGCTCTTACTCGGGGAGGGGGGGGCAAGGCTGTACTGAATATCAGACTAGAAAACGAGGGCAATTTCTACAGTTATTATTGAGATTATTGTTATCATTTTTGTAATGACTTATAAGAAAAAGGAATGAAAAAGGCTGTTGTAACATTGTGGCTAATCTTCAGTGTTTGTATATAGTGTTGTTCTTCAGAAGACCTCATgtcttttgttctcttttttgtAAGTACAGATATTTTTCCGTTTgtatgtctgtttttttgtttttgtgaggAGTGGGCGAAGCAAAAGCCAAACATCTCTGTGGATACATTGTACTGTTGCTGGTCCTGGtctgtttttatttggttttaatggttgtttttgtttctgttttgttctATTTTGCCATTAAATAAATCTATCTTTTTCATA

Function

GO:

id name namespace
GO:0051402 neuron apoptotic process biological_process
GO:0007275 multicellular organism development biological_process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K04506 SIAH1; E3 ubiquitin-protein ligase SIAH1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU215234 lncRNA upstream 267035 16290776 ~ 16291007 (+) True G158776
TU215066 lncRNA upstream 578673 15979026 ~ 15979369 (+) True G158652
TU215060 lncRNA upstream 579096 15976852 ~ 15978946 (+) True G158651
TU215250 lncRNA downstream 3226 16574684 ~ 16575374 (+) True G158786
TU215262 lncRNA downstream 16469 16587927 ~ 16588472 (+) True G158793
TU215287 lncRNA downstream 82678 16654136 ~ 16725205 (+) False st3gal2
TU215301 lncRNA downstream 156998 16728456 ~ 16730115 (+) True G158823
TU215291 lncRNA downstream 167014 16738472 ~ 16738877 (+) True G158818
XM_007249184.3 mRNA upstream 27447 16512334 ~ 16530595 (+) True n4bp1
XM_015604415.2 mRNA upstream 46733 16506896 ~ 16511309 (+) True LOC107197482
XM_007249185.3 mRNA upstream 272998 16274679 ~ 16285044 (+) True cbln1
XM_022679976.1 mRNA upstream 321079 16236180 ~ 16236963 (+) True LOC111194834
XM_022679660.1 mRNA upstream 589952 15960598 ~ 15968090 (+) False LOC103038143
XM_007249175.3 mRNA downstream 126142 16697600 ~ 16725209 (+) True st3gal2
XM_007249169.3 mRNA downstream 192574 16764032 ~ 16773000 (+) True pllp
XM_007249167.3 mRNA downstream 208048 16779506 ~ 16798400 (+) True LOC103031606
XM_007249163.3 mRNA downstream 271203 16842661 ~ 16852459 (+) True hacd3
XM_022679664.1 mRNA downstream 288434 16859892 ~ 16884155 (+) True slc24a1
TU215237 other upstream 178219 16379259 ~ 16379823 (+) True G158779
TU214761 other upstream 1421844 15128368 ~ 15136198 (+) False LOC111194769
TU214762 other upstream 1421844 15128368 ~ 15136198 (+) False LOC111194769
TU214760 other upstream 1421844 15133947 ~ 15136198 (+) False LOC111194769
TU214707 other upstream 1507324 15050222 ~ 15050718 (+) True G158369
trnal-cag_11 other downstream 192068 16763526 ~ 16763608 (+) True trnal-cag_11
XR_002651250.1 other downstream 606217 17177675 ~ 17189251 (+) False zwilch
XR_002651251.1 other downstream 606217 17177675 ~ 17189251 (+) True zwilch
TU215929 other downstream 1954928 18526386 ~ 18576437 (+) True necab2
TU215930 other downstream 1954928 18526386 ~ 18576437 (+) False necab2

Expression Profile