RNA id: TU215287


Basic Information

Item Value
RNA id TU215287
length 2263
lncRNA type sense_over
GC content 0.43
exon number 5
gene id st3gal2
representative False

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 16654136 ~ 16725209 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCGGGGGTGCTGTGAAAGCAGTGCTGTCTGAGAGATTCAGGGACTATTTTCTCCACGTTGAATTAGCTAGAGGccgacacacacatatacacacatatacacatacacacacttagcCTTAGCTTGTCAGAGCTGCAAAACAGACAGGACAGCACATTCCCATCACATCTGGACAGGGCGAGCAGGACCAGGCTGGACATGAAACCTCGCCTACCAGCTGAGGATCCATGTGAagaatattattattcatatgGCAGCAGCTGAGTCTTTCTTTATCTGCCGCTTCAGACTGGAGGACTGGAGCGATTCAGGACTGatgggagaggaggaggagcaggggCTGTGATTTCCAGGCTGAgcccagcagcagctcaaagcTGTGTTTGAAGAAAcgagaagaaggaggagaagaagagttTTGCATCCCAGACACGAAGGATCTTCCACTGTGAGTGACCAAAGACCAGCAGCATCTAGTCTTGTAATCATCTGATCTGGCTGAACAGAGTGATTGGACTGGAGAGGCTCTATAACAGAGTGGACCCTTTGGAACACATACATCACACacgctcaacacacacacacacactcctctgtgAGGATTTCGTTAATATTGCGCTTCACATTAGGCGTGTCCTCCCCTCCTTAAAGCTTGTGCAACTCTCATCCATCACTGCTGAGCACTGTGCCTTCAGGACCAGGGTGAAATCCCTCCCACCCTGTCCTCTCACCTCTTCCCTTTTCATTCACTTGCAAGAAACCCATCATGGCCGTACAAATCTAACCTCTGTTGATTCTTCATTCACAATCCATATCTGAGGAGAAAGAAGTATAGTTGGGATGTATGGTGAGATCAAAGAACCTGTGAGATGTTGGGAAGACTAAACTGCAGTCCATCACCAAAGAATCCCATTATCTATACCTTTTAATTTGATACCTTCTTATTAATCTGGTTTTATAAAGATAAACAACTTTACTAGTATGAAAAAAAgacaagggaaaaaaaatcttgtttttgaGAGTGCAAAGAAGATCCAAATACACAGATTGtcaaaaaaatagttgcacctcGATAGAATAGACCAATAGGAAGCAAACTGGTGAGTAGTTGTGCCAGTTATGACAGCATAAAGTGACTCCGAATGTGGAGGTACTGTGATCAGTTCTATGATCAATGGTTTGCTGTCACTCATCCAGATAGCCTGGGGTCTTGATGTTGGATGCAATTTCGTACAATACCAGTTCTGCTTTGGTCACAATTAGGCACCTTGACAGTccaatttaacattaaaaaggtCCTGCAACAAATGGCTCTACTTTTCTCATTGCACACTCTGCTATGcattttcaacaggacaatgctcatccacatacagCTGCTGtgtcaagagcttgccttggcCAGCATCATTACATGCGAGGACGTCTGGCACGTCACactacacatgcattacaccctacttctgtatgtgtagattaaaaaatatgacCCAGGATGCTCATATCCATCTACATTTATAAATCacttattgttcctggtaatctTTATCTTAATTccaaatagcattgcaatcaaGCACGTcctttctgggtgcaactatttcttTGACAATTAGTGTAAAAAGCGAGGAGAACCAAAATGGTGTTTTtcctctaaaaaaaatgtaataaagcagggctgctgtgattgggTGACAAGGCTGGAACACAGTCCATTTCACCAATGGCACATCAAAATCACTTTGACCCGTCTTTAAGTACTGACGTCCACCTGCACTGTTGGTGATATTCCTATCTCACGCTTTAATATTCTTCACATCAGGGGCCTACAGATCTGTGCCTGACTCCTTCCAAGAGGGGAAAAgcacttttctctctttcctttttatcGACAGGGTTGCAGTAGGCCAGTAGTTTGGAAGGTTAATGGAAGCATGACTGATGTTTTCACTTATGGATCGTTGGGATTTGGTTGAGGGAAAAGCTCTGACCGATTCCACCACCCACATCTTTGACACAGAGGGCCTCTCTTTCAGCTCTAGAGGTCCACAAGCAAACCAGTTATCCACCGACAACACAGACTGTACATATTCTCCTGGTATTTTACTGCGCTTCTAAACAAAACTCCTCCTCATTAGTGGTGTAGTGACCATCGATGGGTCAGTGctctttttccttcattttccaATTTCAATCTCTGTGTGTAATTATGGACTGTTTTTATCTTATGCTATTGTaagaaataaatgcaaattttaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU215262 lncRNA upstream 65664 16587927 ~ 16588472 (+) True G158793
TU215250 lncRNA upstream 78762 16574684 ~ 16575374 (+) True G158786
TU215247 lncRNA upstream 93126 16542878 ~ 16561010 (+) False siah1
TU215234 lncRNA upstream 363129 16290776 ~ 16291007 (+) True G158776
TU215066 lncRNA upstream 674767 15979026 ~ 15979369 (+) True G158652
TU215301 lncRNA downstream 3251 16728456 ~ 16730115 (+) True G158823
TU215291 lncRNA downstream 13267 16738472 ~ 16738877 (+) True G158818
TU215319 lncRNA downstream 49475 16774680 ~ 16777218 (+) True G158837
TU215317 lncRNA downstream 70528 16795733 ~ 16798375 (+) False LOC103031606
XR_002651249.1 lncRNA downstream 92030 16817235 ~ 16821091 (+) True LOC111194771
XM_007249183.2 mRNA upstream 82678 16542894 ~ 16571458 (+) False siah1
XM_007249181.3 mRNA upstream 82678 16558042 ~ 16571458 (+) True siah1
XM_007249182.3 mRNA upstream 82678 16558042 ~ 16571458 (+) False siah1
XM_007249184.3 mRNA upstream 123541 16512334 ~ 16530595 (+) True n4bp1
XM_015604415.2 mRNA upstream 142827 16506896 ~ 16511309 (+) True LOC107197482
XM_007249169.3 mRNA downstream 38827 16764032 ~ 16773000 (+) True pllp
XM_007249167.3 mRNA downstream 54301 16779506 ~ 16798400 (+) True LOC103031606
XM_007249163.3 mRNA downstream 117456 16842661 ~ 16852459 (+) True hacd3
XM_022679664.1 mRNA downstream 134687 16859892 ~ 16884155 (+) True slc24a1
XM_007249161.3 mRNA downstream 134688 16859893 ~ 16884155 (+) False slc24a1
TU215237 other upstream 274313 16379259 ~ 16379823 (+) True G158779
TU214761 other upstream 1517938 15128368 ~ 15136198 (+) False LOC111194769
TU214762 other upstream 1517938 15128368 ~ 15136198 (+) False LOC111194769
TU214760 other upstream 1517938 15133947 ~ 15136198 (+) False LOC111194769
TU214707 other upstream 1603418 15050222 ~ 15050718 (+) True G158369
trnal-cag_11 other downstream 38321 16763526 ~ 16763608 (+) True trnal-cag_11
XR_002651250.1 other downstream 452470 17177675 ~ 17189251 (+) False zwilch
XR_002651251.1 other downstream 452470 17177675 ~ 17189251 (+) True zwilch
TU215929 other downstream 1801181 18526386 ~ 18576437 (+) True necab2
TU215930 other downstream 1801181 18526386 ~ 18576437 (+) False necab2

Expression Profile