RNA id: TU215341


Basic Information

Item Value
RNA id TU215341
length 323
lncRNA type intronic
GC content 0.46
exon number 1
gene id G158855
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 16880518 ~ 16880840 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGGCGTTTTTCATGCCGTAAATATACGCTGCCCCCATCGGGTTTAATTCAGGTAATTCGGGTATCTGTCTCTCACCGTCAAAATGAAGCTCTAAATCTTctcctgttatctctatatgagtgtaGAAAAGTGCTGCACATCTGTAGGGAATAGTCGTTAATACTGTATCAGTCGCTCGCTGTGTTTTATGTTGTTAGGACTACAGTTTTTCCCTTTTTGTTAAGGTCACGCGTTTTCTGCCGCGGTACCACATTGTACACGgtaaccaagctgaactgggTTTAACGACAGAGGCGTGGTCATGGGTGTGGCCACGGGCGTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU215334 lncRNA upstream 40161 16836713 ~ 16840357 (+) True G158852
XR_002651249.1 lncRNA upstream 59427 16817235 ~ 16821091 (+) True LOC111194771
TU215317 lncRNA upstream 82143 16795733 ~ 16798375 (+) False LOC103031606
TU215319 lncRNA upstream 103300 16774680 ~ 16777218 (+) True G158837
TU215291 lncRNA upstream 141641 16738472 ~ 16738877 (+) True G158818
TU215359 lncRNA downstream 58688 16939528 ~ 16939732 (+) True G158873
TU215360 lncRNA downstream 67624 16948464 ~ 16948756 (+) True G158874
TU215361 lncRNA downstream 107930 16988770 ~ 16989051 (+) True G158875
TU215362 lncRNA downstream 114277 16995117 ~ 16995418 (+) True G158876
TU215363 lncRNA downstream 117964 16998804 ~ 16999039 (+) True G158877
XM_007249163.3 mRNA upstream 28059 16842661 ~ 16852459 (+) True hacd3
XM_007249167.3 mRNA upstream 82118 16779506 ~ 16798400 (+) True LOC103031606
XM_007249169.3 mRNA upstream 107518 16764032 ~ 16773000 (+) True pllp
XM_007249175.3 mRNA upstream 155309 16697600 ~ 16725209 (+) True st3gal2
XM_007249181.3 mRNA upstream 309060 16558042 ~ 16571458 (+) True siah1
XM_007249158.3 mRNA downstream 40529 16921369 ~ 16931362 (+) True rab11a
XM_007249157.3 mRNA downstream 268980 17149820 ~ 17172228 (+) True map2k1
XM_007249153.3 mRNA downstream 296835 17177675 ~ 17189251 (+) False zwilch
XM_022679672.1 mRNA downstream 414367 17295207 ~ 17301682 (+) True LOC107197433
XM_022679673.1 mRNA downstream 414367 17295207 ~ 17301682 (+) False LOC107197433
trnal-cag_11 other upstream 116910 16763526 ~ 16763608 (+) True trnal-cag_11
TU215237 other upstream 500695 16379259 ~ 16379823 (+) True G158779
TU214761 other upstream 1744320 15128368 ~ 15136198 (+) False LOC111194769
XR_002651250.1 other downstream 296835 17177675 ~ 17189251 (+) False zwilch
XR_002651251.1 other downstream 296835 17177675 ~ 17189251 (+) True zwilch
TU215929 other downstream 1645546 18526386 ~ 18576437 (+) True necab2
TU215930 other downstream 1645546 18526386 ~ 18576437 (+) False necab2
TU215931 other downstream 1645546 18526386 ~ 18576437 (+) False necab2

Expression Profile