RNA id: TU215359


Basic Information

Item Value
RNA id TU215359
length 205
lncRNA type inter_gene
GC content 0.57
exon number 1
gene id G158873
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 16939528 ~ 16939732 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ccacgTCATAGACATTCCTGCTAGCGGAGGTGAGagtggtgctggtgctggagcagaaCGACAGATCCCTGTGTGCAGGAGATTTCATCTCCACATAGCTGCTCTCTGTGTGCTTGCAGGCCAAGCCCGGCGGGTCCCGGATGGTGGCGTAGGggttttcactgttcagagagcaggagctgGAGCTGCACATGGATGTCTTAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU215341 lncRNA upstream 58688 16880518 ~ 16880840 (+) True G158855
TU215334 lncRNA upstream 99171 16836713 ~ 16840357 (+) True G158852
XR_002651249.1 lncRNA upstream 118437 16817235 ~ 16821091 (+) True LOC111194771
TU215317 lncRNA upstream 141153 16795733 ~ 16798375 (+) False LOC103031606
TU215319 lncRNA upstream 162310 16774680 ~ 16777218 (+) True G158837
TU215360 lncRNA downstream 8732 16948464 ~ 16948756 (+) True G158874
TU215361 lncRNA downstream 49038 16988770 ~ 16989051 (+) True G158875
TU215362 lncRNA downstream 55385 16995117 ~ 16995418 (+) True G158876
TU215363 lncRNA downstream 59072 16998804 ~ 16999039 (+) True G158877
TU215365 lncRNA downstream 139380 17079112 ~ 17083738 (+) False G158878
XM_007249158.3 mRNA upstream 8166 16921369 ~ 16931362 (+) True rab11a
XM_022679664.1 mRNA upstream 55373 16859892 ~ 16884155 (+) True slc24a1
XM_007249161.3 mRNA upstream 55373 16859893 ~ 16884155 (+) False slc24a1
XM_015605789.2 mRNA upstream 55373 16859893 ~ 16884155 (+) False slc24a1
XM_015605790.2 mRNA upstream 55373 16859894 ~ 16884155 (+) False slc24a1
XM_007249157.3 mRNA downstream 210088 17149820 ~ 17172228 (+) True map2k1
XM_007249153.3 mRNA downstream 237943 17177675 ~ 17189251 (+) False zwilch
XM_022679672.1 mRNA downstream 355475 17295207 ~ 17301682 (+) True LOC107197433
XM_022679673.1 mRNA downstream 355475 17295207 ~ 17301682 (+) False LOC107197433
XM_007249251.3 mRNA downstream 387368 17327100 ~ 17372206 (+) True smad6
trnal-cag_11 other upstream 175920 16763526 ~ 16763608 (+) True trnal-cag_11
TU215237 other upstream 559705 16379259 ~ 16379823 (+) True G158779
TU214761 other upstream 1803330 15128368 ~ 15136198 (+) False LOC111194769
XR_002651250.1 other downstream 237943 17177675 ~ 17189251 (+) False zwilch
XR_002651251.1 other downstream 237943 17177675 ~ 17189251 (+) True zwilch
TU215929 other downstream 1586654 18526386 ~ 18576437 (+) True necab2
TU215930 other downstream 1586654 18526386 ~ 18576437 (+) False necab2
TU215931 other downstream 1586654 18526386 ~ 18576437 (+) False necab2

Expression Profile