RNA id: TU215360


Basic Information

Item Value
RNA id TU215360
length 293
lncRNA type inter_gene
GC content 0.56
exon number 1
gene id G158874
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 16948464 ~ 16948756 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGCGAGTAGTCAGTGTTGGTTATACGCAAGGCCGGCGTGTAGGACACGCTGGGCATGTCCTGACCCTTGTCCCGCTGCCGCTGCCTGTACCACACAAACAGGCTGAGCATTGCCatgatgatgaggaggaggaagatgatGCCCATGACGGCACCGGCTGACTGGCGTTCAGAGGTCAGGGCTGGGCTGATCTTGGTGTAGGGATTCAGCTCCTCCATCATTAGAGCcgctgagacacacacacacaaacacacacacacacacacacacacacacacacacacacacacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU215359 lncRNA upstream 8732 16939528 ~ 16939732 (+) True G158873
TU215341 lncRNA upstream 67624 16880518 ~ 16880840 (+) True G158855
TU215334 lncRNA upstream 108107 16836713 ~ 16840357 (+) True G158852
XR_002651249.1 lncRNA upstream 127373 16817235 ~ 16821091 (+) True LOC111194771
TU215317 lncRNA upstream 150089 16795733 ~ 16798375 (+) False LOC103031606
TU215361 lncRNA downstream 40014 16988770 ~ 16989051 (+) True G158875
TU215362 lncRNA downstream 46361 16995117 ~ 16995418 (+) True G158876
TU215363 lncRNA downstream 50048 16998804 ~ 16999039 (+) True G158877
TU215365 lncRNA downstream 130356 17079112 ~ 17083738 (+) False G158878
TU215367 lncRNA downstream 130356 17079112 ~ 17083738 (+) False G158878
XM_007249158.3 mRNA upstream 17102 16921369 ~ 16931362 (+) True rab11a
XM_022679664.1 mRNA upstream 64309 16859892 ~ 16884155 (+) True slc24a1
XM_007249157.3 mRNA downstream 201064 17149820 ~ 17172228 (+) True map2k1
XM_007249153.3 mRNA downstream 228919 17177675 ~ 17189251 (+) False zwilch
XM_022679672.1 mRNA downstream 346451 17295207 ~ 17301682 (+) True LOC107197433
XM_022679673.1 mRNA downstream 346451 17295207 ~ 17301682 (+) False LOC107197433
XM_007249251.3 mRNA downstream 378344 17327100 ~ 17372206 (+) True smad6
trnal-cag_11 other upstream 184856 16763526 ~ 16763608 (+) True trnal-cag_11
TU215237 other upstream 568641 16379259 ~ 16379823 (+) True G158779
TU214761 other upstream 1812266 15128368 ~ 15136198 (+) False LOC111194769
XR_002651250.1 other downstream 228919 17177675 ~ 17189251 (+) False zwilch
XR_002651251.1 other downstream 228919 17177675 ~ 17189251 (+) True zwilch
TU215929 other downstream 1577630 18526386 ~ 18576437 (+) True necab2
TU215930 other downstream 1577630 18526386 ~ 18576437 (+) False necab2
TU215931 other downstream 1577630 18526386 ~ 18576437 (+) False necab2

Expression Profile