RNA id: TU215388


Basic Information

Item Value
RNA id TU215388
length 1272
lncRNA type sense_over
GC content 0.36
exon number 2
gene id map2k1
representative False

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 17101612 ~ 17172228 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CAATACACACAcacacacacacacatatacacacacaccagtgttTCTATATGGgctcaaatttgaaaatcaGTTTCCCAGTCAGTTCAGTAACCAATCACTGCCTCTTTTAACCCCTTCACACTGATGTCATAAGTATTGTGATGAGGTCATGCTGAGATAAAACAGgctgctgtaataatcagcctATAAGGTCTGCATTCAGCAGCAAAGccttttacagtgtgaaaacactccatttcattaaaaacattaatttggtCCTGGTGAATGATACACAAACTATGATTGAACTATGAAAATGCGTGACAAATTGGCCCATATGTATATGATAATGTGTTTGCTGCTGGATGTATCAAAtgatctatatttatatttctaaagGGTAAACAGTAAGTGAATCCCAGCTGAACTGTTTAGTCCCTGAGCCTAAAAAATCCTTGCTGCTCTCCTGGGAACACAAAAGCCATCACCTGCATGCCGGTACTGCAGGAATTCATTGCCAAGTGAGTTGTTAAAAGTGAACAAACCAAggccattttttttacacaggctAAAATGCTCACATCAGTTTTGCTTTATTTTCCTCTAAGCAGtcagtgtattttgtattgGAGCAATGGTGTGTTAACTAAGTCAGtataaaatagatataaatgtCATCTAAATTGAGATGGCAAAACTCTTTTATTTGCCGTTGTTAAAAATTTCTGCATCACTGTCTGTTTGAACTTGCTGTTGTGGCTAACTTTGCTGGAAATATGCCTCTTTTGTATCTGTATTCTAAAGTTTGTTTTACTATGCTGAAATGTAATTAGACAGACAGATTTTATAAGTTTTACATCAGTTCAAACCAACCAGCAACTAACCAGTTCCTCCTGTAGCCATGTGCTATTGCAAAGGGTTGGGATCACTTAATAAAATTGTAGACAGGAAAAATGCTCCTCCTTAATAAGCATTACAATAGAAATGATAGGAAGATAACTGTATGGGTGTCATCAAACTGTTACTGTCGGTTACAGCTGCAGTCCACGTTTTCTGCTTGACACATTATTCTTCCATTACAGTGCTTTTAACACCAAAGCTCATTTCCAATGGGAGCCCTCACTGATATACATcgatttttattacttttaatatgtgtaatattttttctttacctttccTTTTACTTTAAGTGTGAAGTCTGTGCAGGCCTTTAATGTTGTCATTTGAGAAAATTACTGCAACTATAAATTggtataaattataataaacaggatttatttaact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU215373 lncRNA upstream 17351 17083953 ~ 17084261 (+) True G158881
TU215365 lncRNA upstream 17874 17079112 ~ 17083738 (+) False G158878
TU215382 lncRNA downstream 843 17173067 ~ 17177192 (+) True G158882
TU215379 lncRNA downstream 2429 17174653 ~ 17177192 (+) False G158882
TU215516 lncRNA downstream 111243 17283467 ~ 17283882 (+) True G158991
TU215533 lncRNA downstream 155029 17327253 ~ 17328197 (+) False smad6
TU215532 lncRNA downstream 156146 17328370 ~ 17372021 (+) False smad6
XM_007249158.3 mRNA upstream 170250 16921369 ~ 16931362 (+) True rab11a
XM_022679664.1 mRNA upstream 217457 16859892 ~ 16884155 (+) True slc24a1
XM_007249153.3 mRNA downstream 5451 17177675 ~ 17189251 (+) False zwilch
XM_022679672.1 mRNA downstream 122983 17295207 ~ 17301682 (+) True LOC107197433
XM_022679673.1 mRNA downstream 122983 17295207 ~ 17301682 (+) False LOC107197433
XM_007249251.3 mRNA downstream 154876 17327100 ~ 17372206 (+) True smad6
XM_007249152.3 mRNA downstream 252994 17425218 ~ 17447793 (+) True LOC103027004
trnal-cag_11 other upstream 338004 16763526 ~ 16763608 (+) True trnal-cag_11
TU215237 other upstream 721789 16379259 ~ 16379823 (+) True G158779
TU214761 other upstream 1965414 15128368 ~ 15136198 (+) False LOC111194769
XR_002651250.1 other downstream 5451 17177675 ~ 17189251 (+) False zwilch
XR_002651251.1 other downstream 5451 17177675 ~ 17189251 (+) True zwilch
TU215929 other downstream 1354162 18526386 ~ 18576437 (+) True necab2
TU215930 other downstream 1354162 18526386 ~ 18576437 (+) False necab2
TU215931 other downstream 1354162 18526386 ~ 18576437 (+) False necab2

Expression Profile