RNA id: TU215533


Basic Information

Item Value
RNA id TU215533
length 945
lncRNA type sense_over
GC content 0.54
exon number 1
gene id smad6
representative False

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 17327100 ~ 17372206 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTGCAGTTTGAGCAGGTCTGTGCGCCGGATCAGGAGCTGTGCTTGAATGTAGTTCTCACGGATTTGCTGCTTTTTGTTTTGGTGCTGGCTGCTTCTTCACACTACTTCACtcacagataaacacacacgcGCACGAGCGGATACCTCTGGACCTTTGAACCGGAGTGGACACCGAGCAGAACCGGGATTGTtctctttttgcatttttttgctgttttttgtgttgtgcATGTCTGTGGATTTTACCCCTCGGTGGAGCGTGTTCTTCTAGTTCTTCTTTTTAATTCATGTCTGTGCAGAGTGGATGTGAGCTGTGGGCTGGCGGCTCTGGGAGCGGGCGAGTTCTGCGTCCCGGCGCGTCCGGCTTTTTGATCTGACGCACGCGGGGCGCTGTGAGTCCCGCTAGCTGCTAAACTGTGTCTGCTAGCTGAGAACCCAGAAACTAGTCTGAAACGAGTCTGCAGCCTATAAAATAACGCTAAACTAGCTTTTTCCAGCAGCCCACAGTGTCTGTGTATCACGCGAGCTCGCAGCTGAATGCATTTTGATTTCTGCGAGGTTGTctcgtgcagcagcagcagctcggttGTAAATGCGAGCCACCGCGGCGCCTTCCAAACTCATGTTGTGGAGGTTTTGCCCCCAGCAGCCCGCACGGCGCTCAACAGCAGCGACCGTGGATGAGGCTCCTACACGGGTTTGAAGCGTGACCGGGGGACACGAGAGAGCAGAGGAGCGGAGGAAGAATtagaaaaaaggaaggaaaacgaagaaaaagagtgaaaaagaagAGCCGGAgcacgaggaggaggaggaggagaaggagataAGAGCGTGCGGTCAGGAGGGGGCTCGAAGTTGTCGTATGTTCAGGACGAAACGCTCAGGTCTCGTGCGGCGACTCTGGCGAAGCCGTTTGGTTCCGGATAGAGACGGAGGCGACGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU215516 lncRNA upstream 43371 17283467 ~ 17283882 (+) True G158991
TU215382 lncRNA upstream 150061 17173067 ~ 17177192 (+) True G158882
TU215379 lncRNA upstream 150061 17174653 ~ 17177192 (+) False G158882
TU215388 lncRNA upstream 155029 17101612 ~ 17172224 (+) False map2k1
TU215396 lncRNA upstream 168802 17157142 ~ 17158451 (+) True G158891
TU215532 lncRNA downstream 173 17328370 ~ 17372021 (+) False smad6
TU215548 lncRNA downstream 120635 17448832 ~ 17451332 (+) True G159014
TU215551 lncRNA downstream 127118 17455315 ~ 17456977 (+) True G159017
TU215567 lncRNA downstream 267862 17596059 ~ 17599354 (+) True G159028
TU215675 lncRNA downstream 541810 17870007 ~ 17870468 (+) True G159115
XM_022679672.1 mRNA upstream 25571 17295207 ~ 17301682 (+) True LOC107197433
XM_022679673.1 mRNA upstream 25571 17295207 ~ 17301682 (+) False LOC107197433
XM_007249153.3 mRNA upstream 138002 17177675 ~ 17189251 (+) False zwilch
XM_007249157.3 mRNA upstream 155025 17149820 ~ 17172228 (+) True map2k1
XM_007249158.3 mRNA upstream 395891 16921369 ~ 16931362 (+) True rab11a
XM_007249152.3 mRNA downstream 97021 17425218 ~ 17447793 (+) True LOC103027004
XM_007249149.3 mRNA downstream 129818 17458015 ~ 17492931 (+) True iqch
XM_007249148.3 mRNA downstream 165596 17493793 ~ 17498771 (+) True c18h15orf61
XM_022679676.1 mRNA downstream 235678 17563875 ~ 17571917 (+) True LOC103029280
XM_022679679.1 mRNA downstream 235678 17563875 ~ 17571917 (+) False LOC103029280
XR_002651250.1 other upstream 138002 17177675 ~ 17189251 (+) False zwilch
XR_002651251.1 other upstream 138002 17177675 ~ 17189251 (+) True zwilch
trnal-cag_11 other upstream 563645 16763526 ~ 16763608 (+) True trnal-cag_11
TU215237 other upstream 947430 16379259 ~ 16379823 (+) True G158779
TU214760 other upstream 2191055 15133947 ~ 15136198 (+) False LOC111194769
TU215929 other downstream 1198189 18526386 ~ 18576437 (+) True necab2
TU215930 other downstream 1198189 18526386 ~ 18576437 (+) False necab2
TU215931 other downstream 1198189 18526386 ~ 18576437 (+) False necab2
TU216418 other downstream 2857319 20185516 ~ 20186919 (+) True G159666
TU216494 other downstream 3408401 20736598 ~ 20737049 (+) True G159728

Expression Profile