RNA id: XM_007249251.3


Basic Information

Item Value
RNA id XM_007249251.3
length 2873
RNA type mRNA
GC content 0.57
exon number 4
gene id smad6
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 17327100 ~ 17372206 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TAGGCAGCCAATGGCTCCACCGCTCTCCTCGGGGGCCCCGCGTGCGTgcgtatgtgtatgtgtgtgtgtctctgtgtgtatgtgtgtgtgtcagcgggagaggaaaaaaaggaaaagggagagagagaaacgggagaaaggcagagaagtgGGTTGCAGTTTGAGCAGGTCTGTGCGCCGGATCAGGAGCTGTGCTTGAATGTAGTTCTCACGGATTTGCTGCTTTTTGTTTTGGTGCTGGCTGCTTCTTCACACTACTTCACtcacagataaacacacacgcGCACGAGCGGATACCTCTGGACCTTTGAACCGGAGTGGACACCGAGCAGAACCGGGATTGTtctctttttgcatttttttgctgttttttgtgttgtgcATGTCTGTGGATTTTACCCCTCGGTGGAGCGTGTTCTTCTAGTTCTTCTTTTTAATTCATGTCTGTGCAGAGTGGATGTGAGCTGTGGGCTGGCGGCTCTGGGAGCGGGCGAGTTCTGCGTCCCGGCGCGTCCGGCTTTTTGATCTGACGCACGCGGGGCGCTGTGAGTCCCGCTAGCTGCTAAACTGTGTCTGCTAGCTGAGAACCCAGAAACTAGTCTGAAACGAGTCTGCAGCCTATAAAATAACGCTAAACTAGCTTTTTCCAGCAGCCCACAGTGTCTGTGTATCACGCGAGCTCGCAGCTGAATGCATTTTGATTTCTGCGAGGTTGTctcgtgcagcagcagcagctcggttGTAAATGCGAGCCACCGCGGCGCCTTCCAAACTCATGTTGTGGAGGTTTTGCCCCCAGCAGCCCGCACGGCGCTCAACAGCAGCGACCGTGGATGAGGCTCCTACACGGGTTTGAAGCGTGACCGGGGGACACGAGAGAGCAGAGGAGCGGAGGAAGAATtagaaaaaaggaaggaaaacgaagaaaaagagtgaaaaagaagAGCCGGAgcacgaggaggaggaggaggagaaggagataAGAGCGTGCGGTCAGGAGGGGGCTCGAAGTTGTCGTATGTTCAGGACGAAACGCTCAGGTCTCGTGCGGCGACTCTGGCGAAGCCGTTTGGTTCCGGATAGAGACGGAGGCGACGGGGATGGCAGGAGGGGGGGCGGCGGCGGAGGGGAAGGAGGCGAGGGCGAGGGGGGCTCACGGACCGGCGAGCGACGCGCGGACGACGTCGCCAAGACGGAGACGGGAGTTTTGTTGAGCGGGTGCGGGAGCGCGGTGGACGGTGGCGGTGGAGGCGGGGGGGACGAAGCCGGGGACGGAGACTGCAGAGCCGTCACGTGCTGCTTGTTTAAAGAGCGCTCggtcagtagtagtagtggaggaggaggagcaagCGGAGGAGACTGGGACGGAGGGGATAACGGCGGCGGAGAACGGGACTCCGGCAGCGCGAGCCCGGGCGGCTCCAGCTCGTGCCGCCTCGCCGAGGCCAACAAGGCGCCCGAGCACGAGCTCAAGAGCGCCACGTACGCGCTGCTCAAGCGGCTGAAGGAGAAGACGCTGCACGCGCTGCTCGAGGCCGTGGAGTCCGGCGGCGGCGTGCCCAGCGAGTGCGTGTTGGTGGCGCGCGCCGAGCTGCGCGCTCCCGGACACGccgcgccgccgccgccgcagcTGCTGCTGTGCAGACTGTACCGCTGGGCAGACGTGCAGCACGCGGCGCAGCTCAAAGCGCTCTGCGAGTGCAAGAGCTTCGGCGCGCAGGACGGGCCACTGGTGTGCTGCAACCCCTACCATTACAGCAGGCTCTGTGGGCCAGAGTCGCCTCCTCCTCCGTACTCAAGGCTTTCCCCTAGTGACGAACACAAGCCACTGGATCTGTCAGATTCCACACTGTCTTACACTGAAACGGAGGCTGCCAGCTCGCCAAACATCACCCAAGGGGAATTCTCAGATGCCAGTCTGTCACCGGACGCCCCCAAACAGACGCACTGGTGCAGCGTGGCGTACTGGGAGCACCGCACGCGGGTGGGCCGCCTCTACCCGGTGTACGAGCCCTCCGTCAGCATCTTCTACGACCTACCTCAAGGCACAGGTTTCTGCCTGGGCCAGCTGAGCGGCGAACGGCGCAGCGGAACCGCCCAGCGCACCCGCGGCAAGATCGGGTACGGCCTGCTGCTCAGCAAGGAGCCCGACGGCGTTTGGGCCTACAACCGCAGCCAGCACCCGATCTTCGTCAACTCGCCCACACTGGAGGCCGGACCAGCCACGCGCGGCCTGCTGGTGGTGCGCAAGGTCATGCCTGGCTACTCCATTAAGGTGTTTGACTATGAGCGTTCGGCGCTGCTGCTGCGGCAGGGGGCGGAGCCGGCGCTCCCGGACGGCCCGTATGACCCCAACAGTGTCCGCATCAGCTTCGCCAAGGGCTGGGGCCCCTGCTACTCGCGCCAGTTCATCACCTCCTGCCCGTGCTGGCTCGAAATCCTCCTCAACAACcacagataacacacacacacacaaacggaCAGACTCGGACTTTGGACTCGAGAGACGCGCCGAGAGACCCTACGGACCCCCACAAACTATCCCAAATATCATCTACTTAGATTTaatataaagttttatatattatatgaaatatatattatacttgtAAATACTGGAGTCATTTTtacaatgtaattatttatgtaTGGTGCAATGTGTACAAGtggaaaaaacaggaaatgcactttggcttatatatattatatatataaatatctataaagATAAAGAATCTTTCAATACCAATTTGAAAAATTATACAGCAAAAATAGGATCAGCCTGGTTTTGGTGTATAGTTTTcatgtattattaatatccAGACAAAAAGCTAACACCATTCACACATTGATAATAAAGTATTCGCATTATA

Function

GO:

id name namespace
GO:0007179 transforming growth factor beta receptor signaling pathway biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K04677 SMAD6; mothers against decapentaplegic homolog 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU215516 lncRNA upstream 43218 17283467 ~ 17283882 (+) True G158991
TU215382 lncRNA upstream 149908 17173067 ~ 17177192 (+) True G158882
TU215379 lncRNA upstream 149908 17174653 ~ 17177192 (+) False G158882
TU215388 lncRNA upstream 154876 17101612 ~ 17172224 (+) False map2k1
TU215548 lncRNA downstream 76626 17448832 ~ 17451332 (+) True G159014
TU215551 lncRNA downstream 83109 17455315 ~ 17456977 (+) True G159017
TU215567 lncRNA downstream 223853 17596059 ~ 17599354 (+) True G159028
TU215675 lncRNA downstream 497801 17870007 ~ 17870468 (+) True G159115
TU215685 lncRNA downstream 554782 17926988 ~ 17931371 (+) True G159120
XM_022679672.1 mRNA upstream 25418 17295207 ~ 17301682 (+) True LOC107197433
XM_022679673.1 mRNA upstream 25418 17295207 ~ 17301682 (+) False LOC107197433
XM_007249153.3 mRNA upstream 137849 17177675 ~ 17189251 (+) False zwilch
XM_007249157.3 mRNA upstream 154872 17149820 ~ 17172228 (+) True map2k1
XM_007249158.3 mRNA upstream 395738 16921369 ~ 16931362 (+) True rab11a
XM_007249152.3 mRNA downstream 53012 17425218 ~ 17447793 (+) True LOC103027004
XM_007249149.3 mRNA downstream 85809 17458015 ~ 17492931 (+) True iqch
XM_007249148.3 mRNA downstream 121587 17493793 ~ 17498771 (+) True c18h15orf61
XM_022679676.1 mRNA downstream 191669 17563875 ~ 17571917 (+) True LOC103029280
XM_022679679.1 mRNA downstream 191669 17563875 ~ 17571917 (+) False LOC103029280
XR_002651250.1 other upstream 137849 17177675 ~ 17189251 (+) False zwilch
XR_002651251.1 other upstream 137849 17177675 ~ 17189251 (+) True zwilch
trnal-cag_11 other upstream 563492 16763526 ~ 16763608 (+) True trnal-cag_11
TU215237 other upstream 947277 16379259 ~ 16379823 (+) True G158779
TU214760 other upstream 2190902 15133947 ~ 15136198 (+) False LOC111194769
TU215929 other downstream 1154180 18526386 ~ 18576437 (+) True necab2
TU215930 other downstream 1154180 18526386 ~ 18576437 (+) False necab2
TU215931 other downstream 1154180 18526386 ~ 18576437 (+) False necab2
TU216418 other downstream 2813310 20185516 ~ 20186919 (+) True G159666
TU216494 other downstream 3364392 20736598 ~ 20737049 (+) True G159728

Expression Profile