RNA id: TU215891


Basic Information

Item Value
RNA id TU215891
length 272
lncRNA type intronic
GC content 0.36
exon number 1
gene id G159274
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 18428155 ~ 18428426 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TATATGACAAAGAATTTTGCAATGATTTTAcatcagtttttgtttttttacagttgcCAAACAGCTTTGAATATGACTCTATATGGCCCGTCTTTTCACCACCACTATTGGTGGTCTACATGCACTTACATCTTCATCAACCAGTGATAACACTGTTTTCTACAACAGCGAGTTGACTGACCAACTCCTAAAATGGTAaaacttaaatgtaaataaacacaaatcagTGTGACAGTGTAACAAGCATTCACTTGCTCGTTGGGCATAATGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002651207.1 lncRNA upstream 14205 18413361 ~ 18413950 (+) True LOC111194744
TU215889 lncRNA upstream 16219 18411312 ~ 18411936 (+) True G159272
TU215773 lncRNA upstream 299726 18114005 ~ 18128429 (+) True G159184
TU215770 lncRNA upstream 318616 18108163 ~ 18109539 (+) True G159182
TU215695 lncRNA upstream 431427 17995698 ~ 17996728 (+) True G159129
TU215933 lncRNA downstream 79985 18508411 ~ 18508695 (+) True G159298
TU215998 lncRNA downstream 184738 18613164 ~ 18615494 (+) True G159344
TU216004 lncRNA downstream 202044 18630470 ~ 18630853 (+) True G159347
TU216006 lncRNA downstream 224024 18652450 ~ 18652676 (+) True G159349
TU216007 lncRNA downstream 224331 18652757 ~ 18657402 (+) True G159350
XM_015607578.2 mRNA upstream 2157 18415527 ~ 18425998 (+) True arpin
XM_022679691.1 mRNA upstream 162352 18261165 ~ 18265803 (+) True LOC103028633
XM_007255961.3 mRNA upstream 263431 18134717 ~ 18164724 (+) True cftr
XM_015607513.2 mRNA upstream 392459 18030488 ~ 18035696 (+) True LOC107197792
XM_007255967.3 mRNA upstream 398150 18023904 ~ 18030005 (+) False wee2
XM_007256237.3 mRNA downstream 1325 18429751 ~ 18435115 (+) False arpin
XM_015607604.2 mRNA downstream 33672 18462098 ~ 18468279 (+) True kmt5b
XM_007256233.3 mRNA downstream 44510 18472936 ~ 18491526 (+) True chka
XM_015607592.2 mRNA downstream 44510 18472936 ~ 18491526 (+) False chka
XM_022679698.1 mRNA downstream 67668 18496094 ~ 18500819 (+) True LOC111194773
XR_002651250.1 other upstream 1238904 17177675 ~ 17189251 (+) False zwilch
XR_002651251.1 other upstream 1238904 17177675 ~ 17189251 (+) True zwilch
trnal-cag_11 other upstream 1664547 16763526 ~ 16763608 (+) True trnal-cag_11
TU215237 other upstream 2048332 16379259 ~ 16379823 (+) True G158779
TU214760 other upstream 3291957 15133947 ~ 15136198 (+) False LOC111194769
TU215929 other downstream 97960 18526386 ~ 18576437 (+) True necab2
TU215930 other downstream 97960 18526386 ~ 18576437 (+) False necab2
TU215931 other downstream 97960 18526386 ~ 18576437 (+) False necab2
TU216418 other downstream 1757090 20185516 ~ 20186919 (+) True G159666
TU216494 other downstream 2308172 20736598 ~ 20737049 (+) True G159728

Expression Profile