RNA id: TU215998


Basic Information

Item Value
RNA id TU215998
length 609
lncRNA type inter_gene
GC content 0.46
exon number 3
gene id G159344
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 18613164 ~ 18615494 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTCCACTACTTTAGAAGAGAAGTCCACTTTCAGTGAGAGCTGAGAGCAGTTGGAGCTCAAGAACCCCTCTGTGGTAGAAGAGGAGGTGGATGAGGATGAGCTAGAAGTCTTTTCCTCCTCTTCAGAGCCTGCCAGTGGTAAGCGCCCCACAAGCAGGGCCACAAACAGGAAGAGGCAGACTGGTGCCATGGTGCCTGCAGTCTGGTTCAGTTCATAGCCCATCCAACTGAGTCTAATAGTGTCTATGCTTCATAAATCAattttcatttctttctaCGTTTTCTCTCCATTTTTGGGTTCCAGCCGAGGTGGTCAGTCACATGGCACAAGAAGAATGATGAGGGCCATTgttccacacacacagataacacTACAGCAGCAGGTAAGAAGGGAAGTTCATCCAATGGTCAGGTCCAAAACAGCTGGAtaaatcttcttcttgattttaATAACTCTTACACTCTCCCCGACACACAGAGGAAGAATATAACCGCCTCCTGAAAACCTCAATACccgctgacacacacacacaactactcACACACTCTACTGGAGATTAGCTGCTAGATTTAGCTGTTATGCTAAACTAGCAAATCGTCCGTGTAACCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU215933 lncRNA upstream 104469 18508411 ~ 18508695 (+) True G159298
TU215891 lncRNA upstream 184738 18428155 ~ 18428426 (+) True G159274
XR_002651207.1 lncRNA upstream 199214 18413361 ~ 18413950 (+) True LOC111194744
TU215889 lncRNA upstream 201228 18411312 ~ 18411936 (+) True G159272
TU215773 lncRNA upstream 484735 18114005 ~ 18128429 (+) True G159184
TU216004 lncRNA downstream 14976 18630470 ~ 18630853 (+) True G159347
TU216006 lncRNA downstream 36956 18652450 ~ 18652676 (+) True G159349
TU216007 lncRNA downstream 37263 18652757 ~ 18657402 (+) True G159350
TU216023 lncRNA downstream 111521 18727015 ~ 18728037 (+) True G159363
TU216026 lncRNA downstream 116989 18732483 ~ 18734814 (+) True G159365
XM_022679978.1 mRNA upstream 36744 18525528 ~ 18576420 (+) False necab2
XM_022679698.1 mRNA upstream 112345 18496094 ~ 18500819 (+) True LOC111194773
XM_007256233.3 mRNA upstream 121638 18472936 ~ 18491526 (+) True chka
XM_015607592.2 mRNA upstream 121638 18472936 ~ 18491526 (+) False chka
XM_015607604.2 mRNA upstream 144885 18462098 ~ 18468279 (+) True kmt5b
XM_007256219.3 mRNA downstream 147191 18762685 ~ 18813328 (+) True ranbp10
XM_015607589.2 mRNA downstream 262641 18878135 ~ 18980992 (+) False ripor1
XM_022679713.1 mRNA downstream 289268 18904762 ~ 18980992 (+) True ripor1
XM_015607588.2 mRNA downstream 316333 18931827 ~ 18980992 (+) False ripor1
XM_007256217.3 mRNA downstream 316334 18931828 ~ 18980992 (+) False ripor1
TU215929 other upstream 36727 18526386 ~ 18576437 (+) True necab2
TU215930 other upstream 36727 18526386 ~ 18576437 (+) False necab2
TU215931 other upstream 36727 18526386 ~ 18576437 (+) False necab2
XR_002651250.1 other upstream 1423913 17177675 ~ 17189251 (+) False zwilch
XR_002651251.1 other upstream 1423913 17177675 ~ 17189251 (+) True zwilch
TU216418 other downstream 1570022 20185516 ~ 20186919 (+) True G159666
TU216494 other downstream 2121104 20736598 ~ 20737049 (+) True G159728
TU216515 other downstream 2393808 21009302 ~ 21011794 (+) True G159748
TU216738 other downstream 3532350 22147844 ~ 22152785 (+) True G159926
XR_002651264.1 other downstream 4007345 22622839 ~ 22623307 (+) True LOC111194779

Expression Profile