RNA id: TU216026


Basic Information

Item Value
RNA id TU216026
length 616
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G159365
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 18732483 ~ 18734814 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cctCCTGTAAGACTGGCTATCcctagaatatgttttaatgcTTGCCCTAATAACCGCTTTGACAgaatataaactattttattaacattactAACACTATAAACAGACAAGAAAGAAGCTATATAATTCAATGTACACTTCAAACTCAAATAAAGTGCTTACATTGTCTGAGAGtctaatgttgtgttcattttaTCTGTGTTGTGAGCTGTCGGTTCCACCATCGCAGTCCGAACTCCTGTTCCAATGAGGTCAGCTCCCATCAGTCCATTCAGCTCTCCATTAAAGGATGTTTTCCTTTGGCTCTCACCTGCTGGAGCCTCGGCTGAATTACTGGGTCGGTCCAGTTTCAGGATGTCCCGGAGGTGCTGGGTCGCGCCCTCTATATCTATGTTGGAACTGGAAGCCATAGGTCAGGGCGCGGGGCTGAATCTGCGGAATTATCACAAAATCCCCACTTATTTCTCTCCGTCTTCGCCCCTCAGCTCGCAACTGTTCAGACTTCCGTCGGTGCTCTCACGCTTTCATTCCCGCCGCTGACTGCAGCTACAGTCTTCAGTTCCGCCACTGTAACATTCCTTTCAGACTGCACCCACTCTCACACTGCAGAGCTCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU216023 lncRNA upstream 4446 18727015 ~ 18728037 (+) True G159363
TU216007 lncRNA upstream 75081 18652757 ~ 18657402 (+) True G159350
TU216006 lncRNA upstream 79807 18652450 ~ 18652676 (+) True G159349
TU216004 lncRNA upstream 101630 18630470 ~ 18630853 (+) True G159347
TU215998 lncRNA upstream 116989 18613164 ~ 18615494 (+) True G159344
TU216052 lncRNA downstream 1588 18736402 ~ 18736673 (+) True G159388
TU216054 lncRNA downstream 3470 18738284 ~ 18752154 (+) True G159389
TU216064 lncRNA downstream 51727 18786541 ~ 18810070 (+) True G159398
TU216181 lncRNA downstream 524482 19259296 ~ 19262326 (+) True G159480
TU216298 lncRNA downstream 828935 19563749 ~ 19563966 (+) True G159579
XM_022679978.1 mRNA upstream 156063 18525528 ~ 18576420 (+) False necab2
XM_022679698.1 mRNA upstream 231664 18496094 ~ 18500819 (+) True LOC111194773
XM_007256233.3 mRNA upstream 240957 18472936 ~ 18491526 (+) True chka
XM_015607592.2 mRNA upstream 240957 18472936 ~ 18491526 (+) False chka
XM_015607604.2 mRNA upstream 264204 18462098 ~ 18468279 (+) True kmt5b
XM_007256219.3 mRNA downstream 27871 18762685 ~ 18813328 (+) True ranbp10
XM_015607589.2 mRNA downstream 143321 18878135 ~ 18980992 (+) False ripor1
XM_022679713.1 mRNA downstream 169948 18904762 ~ 18980992 (+) True ripor1
XM_015607588.2 mRNA downstream 197013 18931827 ~ 18980992 (+) False ripor1
XM_007256217.3 mRNA downstream 197014 18931828 ~ 18980992 (+) False ripor1
TU215929 other upstream 156046 18526386 ~ 18576437 (+) True necab2
TU215930 other upstream 156046 18526386 ~ 18576437 (+) False necab2
TU215931 other upstream 156046 18526386 ~ 18576437 (+) False necab2
XR_002651250.1 other upstream 1543232 17177675 ~ 17189251 (+) False zwilch
TU216418 other downstream 1450702 20185516 ~ 20186919 (+) True G159666
TU216494 other downstream 2001784 20736598 ~ 20737049 (+) True G159728
TU216515 other downstream 2274488 21009302 ~ 21011794 (+) True G159748
TU216738 other downstream 3413030 22147844 ~ 22152785 (+) True G159926
XR_002651264.1 other downstream 3888025 22622839 ~ 22623307 (+) True LOC111194779

Expression Profile