RNA id: TU216054


Basic Information

Item Value
RNA id TU216054
length 1191
lncRNA type inter_gene
GC content 0.46
exon number 5
gene id G159389
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 18738284 ~ 18752154 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTTTTATTGTGTATCGTGGCTTGATAATTATTGTCACAGAAAGTAATGAGCAGAAGGTGGGAAGCACACTGGTCTGAAGGGAGAGGGGGAGTCTGGCTGGTGGTTAAACGTTTCTTTGGATAGCTAGAGCAACCTGACATCACAATGAATGGAGGCTTCAATGTttaagagggagaaaaaaagaaatgtattctttaaaaaaaaaaaaaaaacattttaagaagcATACTCTAAATGCAAGCTGATAACACACTAGGTACTAAAGCAAAGAGAACAGACAGTTAAGACAGATATTAGTTCAAAATCAAACTCAacaactaaaatgtaaaatagtaaCCAGCAGAGGTTAGATTAATACGTCTTTTTTCCTGGCCAGAGTGTCCTCTAACATTCGAGCTCCCCATCATGCAGATCAGCAGAGGAAAGAGGGATCACTTTGATGAATCTGTTGTGGGCTTTCAGCAAAGAAACGCTTCTCGTGTCTGGAGTAGAGGCGCTACTGTATATGCCTGCATGTTATCTGTGATTTGACTTCTTGGAATCCAGTGTCGTTTCTCAAGAGTGATGAACAAAGGGCAGACTGAGAGGTTCAGGCGTCACAGGGGTCGGAGCGCCCCGTTCTCCACCCTCCCCCATATCCCTGACAGCCCAGGTGCTTTTAGCCAAAGTTGTGTATCGCCAGACGGAACATGTCATTGGTGCACACCCACGCCTCATTAATGTTCTTCAGGATGAAGCTCTGATGGAATCCCATGATTGGGTCATCATCTGCCTATTTTAGTTGTCCTACTACCATACTCAATATGCAGCTGTCAGGAGTGGGCTGGTGATCTTGTGCTGTTATGCTGTGGGCTATTTTTGTGAAGGGCAGGCTAGAGAGTTTTTCAACAATCGCTGCTTTTCCCTGGAATTGCTGTCCTTCCCATGTAAGGCATGATGCATCAATATATATTGATCCAAGCTGTGTTCTGTCTGTGTCAAACAGTTGATAGTAATGTTGCACAAAGCTGGATCCTATTTGTTCCCAAATCGGCTTGTCTCCCATCCTGACACACCCAGCTACAGGCACTCAGTGAACCCAAACCGATCCCCCGGTTCCAGTTATGGCGGTTACGGCGCGCGCCGCGGTGAGAAGTCGAACCGCCTCCTCGGCCGCGCATGCGCACATTAGCCGAACGTAGGAATGCTGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU216052 lncRNA upstream 1611 18736402 ~ 18736673 (+) True G159388
TU216026 lncRNA upstream 3470 18732483 ~ 18734814 (+) True G159365
TU216023 lncRNA upstream 10247 18727015 ~ 18728037 (+) True G159363
TU216007 lncRNA upstream 80882 18652757 ~ 18657402 (+) True G159350
TU216006 lncRNA upstream 85608 18652450 ~ 18652676 (+) True G159349
TU216064 lncRNA downstream 34387 18786541 ~ 18810070 (+) True G159398
TU216181 lncRNA downstream 507142 19259296 ~ 19262326 (+) True G159480
TU216298 lncRNA downstream 811595 19563749 ~ 19563966 (+) True G159579
TU216302 lncRNA downstream 833254 19585408 ~ 19585837 (+) True G159583
TU216304 lncRNA downstream 834294 19586448 ~ 19586972 (+) True G159585
XM_022679978.1 mRNA upstream 161864 18525528 ~ 18576420 (+) False necab2
XM_022679698.1 mRNA upstream 237465 18496094 ~ 18500819 (+) True LOC111194773
XM_007256233.3 mRNA upstream 246758 18472936 ~ 18491526 (+) True chka
XM_015607592.2 mRNA upstream 246758 18472936 ~ 18491526 (+) False chka
XM_015607604.2 mRNA upstream 270005 18462098 ~ 18468279 (+) True kmt5b
XM_007256219.3 mRNA downstream 10531 18762685 ~ 18813328 (+) True ranbp10
XM_015607589.2 mRNA downstream 125981 18878135 ~ 18980992 (+) False ripor1
XM_022679713.1 mRNA downstream 152608 18904762 ~ 18980992 (+) True ripor1
XM_015607588.2 mRNA downstream 179673 18931827 ~ 18980992 (+) False ripor1
XM_007256217.3 mRNA downstream 179674 18931828 ~ 18980992 (+) False ripor1
TU215929 other upstream 161847 18526386 ~ 18576437 (+) True necab2
TU215930 other upstream 161847 18526386 ~ 18576437 (+) False necab2
TU215931 other upstream 161847 18526386 ~ 18576437 (+) False necab2
XR_002651250.1 other upstream 1549033 17177675 ~ 17189251 (+) False zwilch
TU216418 other downstream 1433362 20185516 ~ 20186919 (+) True G159666
TU216494 other downstream 1984444 20736598 ~ 20737049 (+) True G159728
TU216515 other downstream 2257148 21009302 ~ 21011794 (+) True G159748
TU216738 other downstream 3395690 22147844 ~ 22152785 (+) True G159926
XR_002651264.1 other downstream 3870685 22622839 ~ 22623307 (+) True LOC111194779

Expression Profile