RNA id: TU216064


Basic Information

Item Value
RNA id TU216064
length 283
lncRNA type sense_over
GC content 0.40
exon number 2
gene id G159398
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 18786541 ~ 18810070 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CAAAAAAACATCTTTCTTAGCACAGATGAAGTGGAATTAACTGGTTTGGGCTGATTGGATTTGTATGAGACAAGAATATCCTGTAGCGTGGGGCCTGCTGCgtcattttttattgtgtaagtaTGCAGCCAGTCAGCCCAGTGTGGTTGGATGCAGGACAACATGTACATATAGAGAAATTTGCATTCTTGTGGGGTGCGTCACGAAACCACATAGTCCTGTACTGAATTGCATGTACTATTAAAAATACAGTCATTAGTGTAGTATGTGAAGTATGATGACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU216054 lncRNA upstream 34387 18738284 ~ 18752154 (+) True G159389
TU216052 lncRNA upstream 49868 18736402 ~ 18736673 (+) True G159388
TU216026 lncRNA upstream 51727 18732483 ~ 18734814 (+) True G159365
TU216023 lncRNA upstream 58504 18727015 ~ 18728037 (+) True G159363
TU216007 lncRNA upstream 129139 18652757 ~ 18657402 (+) True G159350
TU216181 lncRNA downstream 449226 19259296 ~ 19262326 (+) True G159480
TU216298 lncRNA downstream 753679 19563749 ~ 19563966 (+) True G159579
TU216302 lncRNA downstream 775338 19585408 ~ 19585837 (+) True G159583
TU216304 lncRNA downstream 776378 19586448 ~ 19586972 (+) True G159585
XR_002651254.1 lncRNA downstream 797346 19607416 ~ 19665139 (+) True LOC103038177
XM_022679978.1 mRNA upstream 210121 18525528 ~ 18576420 (+) False necab2
XM_022679698.1 mRNA upstream 285722 18496094 ~ 18500819 (+) True LOC111194773
XM_007256233.3 mRNA upstream 295015 18472936 ~ 18491526 (+) True chka
XM_015607592.2 mRNA upstream 295015 18472936 ~ 18491526 (+) False chka
XM_015607604.2 mRNA upstream 318262 18462098 ~ 18468279 (+) True kmt5b
XM_015607589.2 mRNA downstream 68065 18878135 ~ 18980992 (+) False ripor1
XM_022679713.1 mRNA downstream 94692 18904762 ~ 18980992 (+) True ripor1
XM_015607588.2 mRNA downstream 121757 18931827 ~ 18980992 (+) False ripor1
XM_007256217.3 mRNA downstream 121758 18931828 ~ 18980992 (+) False ripor1
XM_022679714.1 mRNA downstream 173532 18983602 ~ 18991711 (+) True ctcf
TU215929 other upstream 210104 18526386 ~ 18576437 (+) True necab2
TU215930 other upstream 210104 18526386 ~ 18576437 (+) False necab2
TU215931 other upstream 210104 18526386 ~ 18576437 (+) False necab2
XR_002651250.1 other upstream 1597290 17177675 ~ 17189251 (+) False zwilch
TU216418 other downstream 1375446 20185516 ~ 20186919 (+) True G159666
TU216494 other downstream 1926528 20736598 ~ 20737049 (+) True G159728
TU216515 other downstream 2199232 21009302 ~ 21011794 (+) True G159748
TU216738 other downstream 3337774 22147844 ~ 22152785 (+) True G159926
XR_002651264.1 other downstream 3812769 22622839 ~ 22623307 (+) True LOC111194779

Expression Profile