RNA id: TU216181


Basic Information

Item Value
RNA id TU216181
length 2990
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G159480
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 19259296 ~ 19262326 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TAATGCTGGAAATGTTTATTTCAAGAATTAACATGACATTTGGAGCCCAAAACTTTTTTGCTTATTTCTTTTGTGAACAATACCAAGATATCTTCTTTTCTGCATATATTTGTacaagtttaaatatttaaaacacaatgcACTGTGACGATGGCAGTCATGGACAGATAAACTCCAGTCTGAAAATGCAGCATTGGTCTTTTTTAACAGCCCTTTCGTTGATTCAGCTGGGGAAAAGAATGCATGTATGAAGTCAGCAAATCCTGACAAGCGTGACCGTGTTTCATTGGATTAGGCTACATTCGTTTATTACCAGTGCAAAtgatcaaataataaaaaaaaaaaacattttaacaaatgCTGTAAATCGAGGCGATTGTGAAAAAGCgttcagagagaaaaaaaacagcagcactctCTTCAAAACAAACCATTAAACACTAGAGAGAACCGAGGagataaacataaaaagaaaccaTGCTATTTCTAATACAGTTATCACTCTTAGTGCAATTACTCTTATACTCTTTATGTGTTTTCATCATCAGTGTTCACACAAATGCTTAGGTTTTTGTATTCAGGCCATACATTCTAATGGTCACATGTATTGCATCTTTGGGATATCTTACAAATCAGTACCACAGTATTGCACTTTcagttaaagaaaataaaaaagaaaaagactgtAAGAGATCTAGGGTGTTTTCTGCACAATATGGCTGCCACAGAAAGTAAGTCATGTTTTGTTTCTTTGAGGTGTTAGTGGATCTTATGTATCCATGTTAAGTGGTCACATATATGAGGTGTTTTCAGTGTCAGCTTAAACAGCAAATACGTCCACATGAAAGCTAAAAGCACTAAATGTGTTGTAAAATcttaaacatataatttttaaaaatattgtatgtaataaatgACTATGAAGGTATACAAGCATTTTTACAGCTATACATCTTGGTTTTCTCTGGCCTGAATTTAAAGTGTTTCCTCTtggttatttttatacataggGAAAAATCCAAGTGCACAAAACCATGTGAGAATgcaagaaagtaaatacaggaagaaggtcctaTGATATGAACTAGTGCTAGTATCTGGGCTAATTAGGTGTTTAGCTCAAATTTGCGAAGTTGCCTAAACCTGCAGAGATGTATTGAGGTCAGAAAATGTTCTTACTACAGTCAaactgctccagagttcgtttgggaccaGAAAGAGTCCCACCTCTGAAGGGTCTTTGTGCGTTTGTGATTACTGTATTTGCCCAAACCCAACATGAATATTCAATTACCCAGTTCCTGTTTATATGATATATAGTATAGACTAGCCCTATCTCTAGTAATGCTCCCAATAGTTGGAAGGAATAGACTAGctcatgtgaagtcagccaccaacACTATGCAgcacagcagaggaaagcacagctctCTAGCTTCAACCAGCgcctgtgctgatcaacatcacacTAGGAGGGTTGTGGGGAGGAAACTTTATCAACCCACTACTTACAGAGCAAGACTAACTGTGTTCATACCGAAACCTCTGCAGCCaatcaaacataaaacacacaatgtTTTTATCCACTGattttttctgccttttttctAACCCCCTTAGCTAACATTTAACAGTtcatctttaatttttttgagcagtggtGCTTTAAGATTTTCTGAAAATACTGagcttaatgtttaataatctaCAGAGATTGTTCACTCTTTGTTTCTACAAATTTTGACAAGACTGCCAAAACCTTAaaacctgtgtgtaatatatacatatgttatatttgttaaaatgtgtttacttCTTAATAGAAGGATATACTGATTAAGGTTAGAATGTACAAAATTAGAATTGATGGAAGTTCCGATCTTCAAAGTTCTTGTCACAAAGATAAAACTAGAAATACACAATACATCAAATTCATCTGCTAAATTTGGCAGCAAGtcacatttaacataaaatattaatactgttTAGGCTGACACTGCTAGATTATGCTGTTTCAATCGTTTCAGTTTCGtaatataaactaatattaataagcTAATATTGACAATGTACTCTAAATTTATCAGAGACAAAATATAAATCATCAGCATAGCATAGACATTTAAGTAAATGCAGTAAGAATATAATTCAACTAAAAATACTTTAGTGCACAAAGATACTGGGTGCCTCAGTATCTGCTTCAGATACAGAATGTGTTATTGAGTAAATAGAGACACAAAATTGTGCAAAAAAAGCAGTGCAtggtttcagtttttttcttttcctaatGTGAGGTCTGCTTTAAAAGTCCCTAGACCTCTCACATTAATACAAACATTACAGTAGCAAATGTTCTCTATGTTTATAttgctataaatatatatttgaatacaaATATAGTGTATgatcaaaatgaaaatatatagaaatgtaTATTTACAACCAAATATTAGAAATGAAACCCCAGCTCCACAAGCATTAACTCCAACACACAGACTAAAGTGCATTCAAACTTGGGCCATGTTTTTTATGCAATGATGCAAATACTCCTTCATTTACTCCCGCGTCATACTGGTAGAAAAGTGGTACCTCAGCAGTGGACTGGTCTTCACCACTCAGGCTGGGGTTTAACTTAAGTGTTGCAGGTCTTTCAGTGGATGTGTGATGTGATTATTTCTCTCAAGAGAATAAGATCCTTTGGATGgcgtcaaaaagaaaaaaaaaacaaaaaacaggtcGGAATCTTCACCAGTGGCTTCAGCGTGTTTCTCTTGTGTACACGTTTTAATGCACATCTTCAGCTGCAAACACTTGAATTCCACTGAGCAGGTCATTCAGTTCAGAGTATCAGGATGTGCTTTTGTAATCCACAGCTGATGATGGATCTCCGTGTGAAACTCTGGCTGTCACAATCACAACCCTGACATCGCTGAATATTCTGAATGGATGTGAGGACCATCTGCCATCCACAGGCCATGTGTTCACCGAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU216064 lncRNA upstream 449226 18786541 ~ 18810070 (+) True G159398
TU216054 lncRNA upstream 507142 18738284 ~ 18752154 (+) True G159389
TU216052 lncRNA upstream 522623 18736402 ~ 18736673 (+) True G159388
TU216026 lncRNA upstream 524482 18732483 ~ 18734814 (+) True G159365
TU216023 lncRNA upstream 531259 18727015 ~ 18728037 (+) True G159363
TU216298 lncRNA downstream 301423 19563749 ~ 19563966 (+) True G159579
TU216302 lncRNA downstream 323082 19585408 ~ 19585837 (+) True G159583
TU216304 lncRNA downstream 324122 19586448 ~ 19586972 (+) True G159585
XR_002651254.1 lncRNA downstream 345090 19607416 ~ 19665139 (+) True LOC103038177
TU216325 lncRNA downstream 365520 19627846 ~ 19630672 (+) True G159588
XM_007256213.2 mRNA upstream 1262 19253357 ~ 19258034 (+) True nudt21
XM_022679719.1 mRNA upstream 22437 19122919 ~ 19236859 (+) True bcar1
XM_022679718.1 mRNA upstream 22437 19189889 ~ 19236859 (+) False bcar1
XM_007256215.3 mRNA upstream 147619 19076082 ~ 19111677 (+) True cfdp1
XM_022679717.1 mRNA upstream 194140 18997053 ~ 19065156 (+) True carmil2
XM_022679723.1 mRNA downstream 55047 19317373 ~ 19422913 (+) False gnao1
XM_022679724.1 mRNA downstream 55052 19317378 ~ 19433125 (+) True gnao1
XM_022679722.1 mRNA downstream 55056 19317382 ~ 19433125 (+) False gnao1
XM_007256208.3 mRNA downstream 189449 19451775 ~ 19496575 (+) True cbfb
XM_007256209.3 mRNA downstream 189449 19451775 ~ 19493357 (+) False cbfb
TU215929 other upstream 682859 18526386 ~ 18576437 (+) True necab2
TU215930 other upstream 682859 18526386 ~ 18576437 (+) False necab2
TU215931 other upstream 682859 18526386 ~ 18576437 (+) False necab2
XR_002651250.1 other upstream 2070045 17177675 ~ 17189251 (+) False zwilch
TU216418 other downstream 923190 20185516 ~ 20186919 (+) True G159666
TU216494 other downstream 1474272 20736598 ~ 20737049 (+) True G159728
TU216515 other downstream 1746976 21009302 ~ 21011794 (+) True G159748
TU216738 other downstream 2885518 22147844 ~ 22152785 (+) True G159926
XR_002651264.1 other downstream 3360513 22622839 ~ 22623307 (+) True LOC111194779

Expression Profile