RNA id: TU216298


Basic Information

Item Value
RNA id TU216298
length 218
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G159579
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 19563749 ~ 19563966 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctaattactctgactgtaactatgacgccgttaccatttcccacaccccgttactgcacgttactttagccgcacttttttttacttcgctttgccctggttaacccctcctctgtccggtgaacttgagcttctggccgctgtgcctgtggtttggcgtggtgaagtgaggcacaattgtgacgatttgcgtgctctaattaattcagtgattgccg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU216181 lncRNA upstream 301423 19259296 ~ 19262326 (+) True G159480
TU216064 lncRNA upstream 753679 18786541 ~ 18810070 (+) True G159398
TU216054 lncRNA upstream 811595 18738284 ~ 18752154 (+) True G159389
TU216052 lncRNA upstream 827076 18736402 ~ 18736673 (+) True G159388
TU216026 lncRNA upstream 828935 18732483 ~ 18734814 (+) True G159365
TU216302 lncRNA downstream 21442 19585408 ~ 19585837 (+) True G159583
TU216304 lncRNA downstream 22482 19586448 ~ 19586972 (+) True G159585
XR_002651254.1 lncRNA downstream 43450 19607416 ~ 19665139 (+) True LOC103038177
TU216325 lncRNA downstream 63880 19627846 ~ 19630672 (+) True G159588
XR_002651256.1 lncRNA downstream 581736 20145702 ~ 20162076 (+) True LOC111194777
XM_022679727.1 mRNA upstream 43196 19515607 ~ 19520553 (+) True LOC111194775
XM_022679725.1 mRNA upstream 51524 19500023 ~ 19512225 (+) True fan1
XM_007256208.3 mRNA upstream 67174 19451775 ~ 19496575 (+) True cbfb
XM_007256209.3 mRNA upstream 70392 19451775 ~ 19493357 (+) False cbfb
XM_015607602.2 mRNA upstream 70403 19451775 ~ 19493346 (+) False cbfb
XM_022679732.1 mRNA downstream 102658 19666624 ~ 19772127 (+) True mef2a
XM_022679729.1 mRNA downstream 102658 19666624 ~ 19772127 (+) False mef2a
XM_022679731.1 mRNA downstream 102658 19666624 ~ 19772127 (+) False mef2a
XM_022679728.1 mRNA downstream 102658 19666624 ~ 19772127 (+) False mef2a
XM_022679730.1 mRNA downstream 102658 19666624 ~ 19772127 (+) False mef2a
TU215929 other upstream 987312 18526386 ~ 18576437 (+) True necab2
TU215930 other upstream 987312 18526386 ~ 18576437 (+) False necab2
TU215931 other upstream 987312 18526386 ~ 18576437 (+) False necab2
XR_002651250.1 other upstream 2374498 17177675 ~ 17189251 (+) False zwilch
TU216418 other downstream 621550 20185516 ~ 20186919 (+) True G159666
TU216494 other downstream 1172632 20736598 ~ 20737049 (+) True G159728
TU216515 other downstream 1445336 21009302 ~ 21011794 (+) True G159748
TU216738 other downstream 2583878 22147844 ~ 22152785 (+) True G159926
XR_002651264.1 other downstream 3058873 22622839 ~ 22623307 (+) True LOC111194779

Expression Profile