RNA id: TU216302


Basic Information

Item Value
RNA id TU216302
length 430
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G159583
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 19585408 ~ 19585837 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tgcctcatgaccagcttctcaaagcacttcatgatgatgggagtaagtgcaatgggacggtagtcattaaggcaggacacttgggacttcttcggcacagggacgatggtggtcgtcttgaagcacgtcggcacgattgcagtactcagagagatgttgaaaatgtctgtgagaacatccgtgagttgttctgcacatcctctgagcactctgccaggtatgctgtctggtcctggggctttccgtgggttgactctgagtagagttttccgcacatcagctgaggacaggcacagtacctggtcgtttggaggaggtgtagtcttccttgctgtcgtgtagttctgtgcttcgaaccttgcgtagaaggagttcagtgcatctggaagggaggcatcactgttacaagcaggggagggtgacttgtagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU216298 lncRNA upstream 21442 19563749 ~ 19563966 (+) True G159579
TU216181 lncRNA upstream 323082 19259296 ~ 19262326 (+) True G159480
TU216064 lncRNA upstream 775338 18786541 ~ 18810070 (+) True G159398
TU216054 lncRNA upstream 833254 18738284 ~ 18752154 (+) True G159389
TU216052 lncRNA upstream 848735 18736402 ~ 18736673 (+) True G159388
TU216304 lncRNA downstream 611 19586448 ~ 19586972 (+) True G159585
XR_002651254.1 lncRNA downstream 21579 19607416 ~ 19665139 (+) True LOC103038177
TU216325 lncRNA downstream 42009 19627846 ~ 19630672 (+) True G159588
XR_002651256.1 lncRNA downstream 559865 20145702 ~ 20162076 (+) True LOC111194777
TU216415 lncRNA downstream 620227 20206064 ~ 20207105 (+) True G159663
XM_022679727.1 mRNA upstream 64855 19515607 ~ 19520553 (+) True LOC111194775
XM_022679725.1 mRNA upstream 73183 19500023 ~ 19512225 (+) True fan1
XM_007256208.3 mRNA upstream 88833 19451775 ~ 19496575 (+) True cbfb
XM_022679732.1 mRNA downstream 80787 19666624 ~ 19772127 (+) True mef2a
XM_022679729.1 mRNA downstream 80787 19666624 ~ 19772127 (+) False mef2a
XM_022679731.1 mRNA downstream 80787 19666624 ~ 19772127 (+) False mef2a
XM_022679728.1 mRNA downstream 80787 19666624 ~ 19772127 (+) False mef2a
XM_022679730.1 mRNA downstream 80787 19666624 ~ 19772127 (+) False mef2a
TU215929 other upstream 1008971 18526386 ~ 18576437 (+) True necab2
TU215930 other upstream 1008971 18526386 ~ 18576437 (+) False necab2
TU215931 other upstream 1008971 18526386 ~ 18576437 (+) False necab2
XR_002651250.1 other upstream 2396157 17177675 ~ 17189251 (+) False zwilch
TU216418 other downstream 599679 20185516 ~ 20186919 (+) True G159666
TU216494 other downstream 1150761 20736598 ~ 20737049 (+) True G159728
TU216515 other downstream 1423465 21009302 ~ 21011794 (+) True G159748
TU216738 other downstream 2562007 22147844 ~ 22152785 (+) True G159926
XR_002651264.1 other downstream 3037002 22622839 ~ 22623307 (+) True LOC111194779

Expression Profile