RNA id: TU216304


Basic Information

Item Value
RNA id TU216304
length 525
lncRNA type inter_gene
GC content 0.57
exon number 1
gene id G159585
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 19586448 ~ 19586972 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tagcattagcaccgttagcattagcattagcactgggtgctacatacactgctattatgtagacgctgctaagctctctgggcaggtagaatggcctggctctgactacagcaaactccaccagcggcgagcagtagctggagatcagcgcagcgttgttacaccattctgtgttgatgtaaacacacaccccacctccacGTACTTTGCCCGAGAGGCCGGCGTCGCGGTCCGCGCGGTAGCATAGCATGCCGCTCACCTCAATCGCGGAGTCCGGGATGGAGTCCGTTAACCACGTCTCCGTGaaaacgaacacacagcagtctctgaactcgcgctgggatgtccgctggagccggagatagtcaatcttgttcggcagggagcaaacgttggagagaaggagagatggaaccgctggccggctggagttagccattagcttagcgcGGACTCCGGCTCTCTTACCGCGCTTTCGGCTCCTCGCGCAACGCTTGCGGAGAGACCTCTTCCGGCTAGCAGGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU216302 lncRNA upstream 611 19585408 ~ 19585837 (+) True G159583
TU216298 lncRNA upstream 22482 19563749 ~ 19563966 (+) True G159579
TU216181 lncRNA upstream 324122 19259296 ~ 19262326 (+) True G159480
TU216064 lncRNA upstream 776378 18786541 ~ 18810070 (+) True G159398
TU216054 lncRNA upstream 834294 18738284 ~ 18752154 (+) True G159389
XR_002651254.1 lncRNA downstream 20444 19607416 ~ 19665139 (+) True LOC103038177
TU216325 lncRNA downstream 40874 19627846 ~ 19630672 (+) True G159588
XR_002651256.1 lncRNA downstream 558730 20145702 ~ 20162076 (+) True LOC111194777
TU216415 lncRNA downstream 619092 20206064 ~ 20207105 (+) True G159663
TU216412 lncRNA downstream 620255 20207227 ~ 20213526 (+) True G159662
XM_022679727.1 mRNA upstream 65895 19515607 ~ 19520553 (+) True LOC111194775
XM_022679725.1 mRNA upstream 74223 19500023 ~ 19512225 (+) True fan1
XM_007256208.3 mRNA upstream 89873 19451775 ~ 19496575 (+) True cbfb
XM_022679732.1 mRNA downstream 79652 19666624 ~ 19772127 (+) True mef2a
XM_022679729.1 mRNA downstream 79652 19666624 ~ 19772127 (+) False mef2a
XM_022679731.1 mRNA downstream 79652 19666624 ~ 19772127 (+) False mef2a
XM_022679728.1 mRNA downstream 79652 19666624 ~ 19772127 (+) False mef2a
XM_022679730.1 mRNA downstream 79652 19666624 ~ 19772127 (+) False mef2a
TU215929 other upstream 1010011 18526386 ~ 18576437 (+) True necab2
TU215930 other upstream 1010011 18526386 ~ 18576437 (+) False necab2
TU215931 other upstream 1010011 18526386 ~ 18576437 (+) False necab2
XR_002651250.1 other upstream 2397197 17177675 ~ 17189251 (+) False zwilch
TU216418 other downstream 598544 20185516 ~ 20186919 (+) True G159666
TU216494 other downstream 1149626 20736598 ~ 20737049 (+) True G159728
TU216515 other downstream 1422330 21009302 ~ 21011794 (+) True G159748
TU216738 other downstream 2560872 22147844 ~ 22152785 (+) True G159926
XR_002651264.1 other downstream 3035867 22622839 ~ 22623307 (+) True LOC111194779

Expression Profile