RNA id: TU216470


Basic Information

Item Value
RNA id TU216470
length 326
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G159705
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 20448458 ~ 20448783 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tattagcctgtgtctgtcctgtgtttttccctcttttggttttctgtgctcctgccctgttttcctgtcttgtgtttccagccatgtgcttttttgagcacatggcattgttttgttattgttctgtctccgccctagccccgccctagccctgcccaagccattagtgttgtcaccttgtgtctcatttgtaactctgccccctcattactccacaggtgtccctagtgtgtgcctgtgtataaatacctcatgtgaTCCATTGTTCTCTGTCGCGCTTTTTTGTTTGACCGTGTTCGTTAATCTTTCCAGATTGTGTTTAAATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU216429 lncRNA upstream 191245 20256507 ~ 20257213 (+) True G159677
TU216412 lncRNA upstream 234932 20207227 ~ 20213526 (+) True G159662
TU216415 lncRNA upstream 241353 20206064 ~ 20207105 (+) True G159663
XR_002651256.1 lncRNA upstream 286382 20145702 ~ 20162076 (+) True LOC111194777
XR_002651254.1 lncRNA upstream 783319 19607416 ~ 19665139 (+) True LOC103038177
TU216471 lncRNA downstream 7028 20455811 ~ 20456164 (+) True G159706
TU216474 lncRNA downstream 81690 20530473 ~ 20530725 (+) True G159709
TU216497 lncRNA downstream 303332 20752115 ~ 20752674 (+) True G159731
TU216500 lncRNA downstream 304017 20752800 ~ 20753254 (+) True G159734
TU216505 lncRNA downstream 401571 20850354 ~ 20850931 (+) True G159739
XM_022679733.1 mRNA upstream 600900 19775339 ~ 19847558 (+) True LOC103025942
XM_022679729.1 mRNA upstream 676331 19666624 ~ 19772127 (+) False mef2a
XM_007254464.3 mRNA downstream 217461 20666244 ~ 20674227 (+) True arrdc4
XM_007254465.3 mRNA downstream 217461 20666244 ~ 20674227 (+) False arrdc4
XM_015607162.2 mRNA downstream 296785 20745568 ~ 20751796 (+) True lysmd4
XM_007254471.3 mRNA downstream 537841 20986624 ~ 21007290 (+) True rgma
XM_007254472.3 mRNA downstream 617286 21066069 ~ 21074573 (+) True fam174b
TU216418 other upstream 261539 20185516 ~ 20186919 (+) True G159666
TU215929 other upstream 1872021 18526386 ~ 18576437 (+) True necab2
TU215930 other upstream 1872021 18526386 ~ 18576437 (+) False necab2
TU215931 other upstream 1872021 18526386 ~ 18576437 (+) False necab2
XR_002651251.1 other upstream 3259207 17177675 ~ 17189251 (+) True zwilch
TU216494 other downstream 287815 20736598 ~ 20737049 (+) True G159728
TU216515 other downstream 560519 21009302 ~ 21011794 (+) True G159748
TU216738 other downstream 1699061 22147844 ~ 22152785 (+) True G159926
XR_002651264.1 other downstream 2174056 22622839 ~ 22623307 (+) True LOC111194779
TU217011 other downstream 2404629 22853412 ~ 22854081 (+) True G160134

Expression Profile