RNA id: TU216474


Basic Information

Item Value
RNA id TU216474
length 253
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G159709
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 20530473 ~ 20530725 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tgtggtaggcccctggggttaggggcgtgaccactgtgacccggaaggaggaagctcacagagatacacagacacggggattaaatgaactcaaatcatacctttattggcttgaaaatgccctccaccacacccagaataaacttaaaacataactcagcccaatggggctctagagtccgtAGAATTACTTAGTTTTTAAGTGTTCATACGAGTCCGCGCAGCCTCAGCCCCCAGCTCCTCAGTGAGAGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU216471 lncRNA upstream 74309 20455811 ~ 20456164 (+) True G159706
TU216470 lncRNA upstream 81690 20448458 ~ 20448783 (+) True G159705
TU216429 lncRNA upstream 273260 20256507 ~ 20257213 (+) True G159677
TU216412 lncRNA upstream 316947 20207227 ~ 20213526 (+) True G159662
TU216415 lncRNA upstream 323368 20206064 ~ 20207105 (+) True G159663
TU216497 lncRNA downstream 221390 20752115 ~ 20752674 (+) True G159731
TU216500 lncRNA downstream 222075 20752800 ~ 20753254 (+) True G159734
TU216505 lncRNA downstream 319629 20850354 ~ 20850931 (+) True G159739
TU216510 lncRNA downstream 366426 20897151 ~ 20897538 (+) True G159744
TU216542 lncRNA downstream 529931 21060656 ~ 21074573 (+) False fam174b
XM_022679733.1 mRNA upstream 682915 19775339 ~ 19847558 (+) True LOC103025942
XM_022679729.1 mRNA upstream 758346 19666624 ~ 19772127 (+) False mef2a
XM_007254464.3 mRNA downstream 135519 20666244 ~ 20674227 (+) True arrdc4
XM_007254465.3 mRNA downstream 135519 20666244 ~ 20674227 (+) False arrdc4
XM_015607162.2 mRNA downstream 214843 20745568 ~ 20751796 (+) True lysmd4
XM_007254471.3 mRNA downstream 455899 20986624 ~ 21007290 (+) True rgma
XM_007254472.3 mRNA downstream 535344 21066069 ~ 21074573 (+) True fam174b
TU216418 other upstream 343554 20185516 ~ 20186919 (+) True G159666
TU215929 other upstream 1954036 18526386 ~ 18576437 (+) True necab2
TU215930 other upstream 1954036 18526386 ~ 18576437 (+) False necab2
TU215931 other upstream 1954036 18526386 ~ 18576437 (+) False necab2
XR_002651251.1 other upstream 3341222 17177675 ~ 17189251 (+) True zwilch
TU216494 other downstream 205873 20736598 ~ 20737049 (+) True G159728
TU216515 other downstream 478577 21009302 ~ 21011794 (+) True G159748
TU216738 other downstream 1617119 22147844 ~ 22152785 (+) True G159926
XR_002651264.1 other downstream 2092114 22622839 ~ 22623307 (+) True LOC111194779
TU217011 other downstream 2322687 22853412 ~ 22854081 (+) True G160134

Expression Profile