RNA id: TU216505


Basic Information

Item Value
RNA id TU216505
length 578
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G159739
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 20850354 ~ 20850931 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

atgacccaggcagggagacgaggagacggacacaagtgcaggtagggcgaaataaataaataatttattaaataaataacaaagaaacacaaagaaacaagtaaacacgtaacaaggataataaaccaaaataaacgagggagactagagaacataaacaaacaagagataataagaataaacaaacagggaataacaacaaggaactaaacttgataaaataataactaacaaacaaaccgtgagtaaataaacaaagaagcaaGCGAGAGACTTAATgtatacaaaactaaactgggcagggataaatacacaaataaccaataaccaaaacaaatcagagaacctaaactaaaccaactagagaataaaataataaacagggaatatatacaagagacggactagaaataaacaaagaaataaacaggaaGCTAAACTAGAAAagggaaaactaaactaagcagggcaagggaaacaaactaggaataaacacggaACTAGGGCTTTAGCAACACAGAAAcgcggagagacagacaacaggggaagatgcaaagaccgacggagacaaagtggca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU216500 lncRNA upstream 97100 20752800 ~ 20753254 (+) True G159734
TU216497 lncRNA upstream 97680 20752115 ~ 20752674 (+) True G159731
TU216474 lncRNA upstream 319629 20530473 ~ 20530725 (+) True G159709
TU216471 lncRNA upstream 394190 20455811 ~ 20456164 (+) True G159706
TU216470 lncRNA upstream 401571 20448458 ~ 20448783 (+) True G159705
TU216510 lncRNA downstream 46220 20897151 ~ 20897538 (+) True G159744
TU216542 lncRNA downstream 209725 21060656 ~ 21074573 (+) False fam174b
TU216548 lncRNA downstream 226288 21077219 ~ 21077425 (+) True G159777
TU216549 lncRNA downstream 229785 21080716 ~ 21081329 (+) True G159778
TU216554 lncRNA downstream 238812 21089743 ~ 21126096 (+) True G159781
XM_015607162.2 mRNA upstream 98558 20745568 ~ 20751796 (+) True lysmd4
XM_007254464.3 mRNA upstream 176127 20666244 ~ 20674227 (+) True arrdc4
XM_007254465.3 mRNA upstream 176127 20666244 ~ 20674227 (+) False arrdc4
XM_022679733.1 mRNA upstream 1002796 19775339 ~ 19847558 (+) True LOC103025942
XM_022679730.1 mRNA upstream 1078227 19666624 ~ 19772127 (+) False mef2a
XM_007254471.3 mRNA downstream 135693 20986624 ~ 21007290 (+) True rgma
XM_007254472.3 mRNA downstream 215138 21066069 ~ 21074573 (+) True fam174b
XM_015607163.2 mRNA downstream 400773 21251704 ~ 21255960 (+) True LOC103034607
XM_007254474.3 mRNA downstream 400773 21251704 ~ 21255960 (+) False LOC103034607
XM_015607165.2 mRNA downstream 400773 21251704 ~ 21255960 (+) False LOC103034607
TU216494 other upstream 113305 20736598 ~ 20737049 (+) True G159728
TU216418 other upstream 663435 20185516 ~ 20186919 (+) True G159666
TU215929 other upstream 2273917 18526386 ~ 18576437 (+) True necab2
TU216515 other downstream 158371 21009302 ~ 21011794 (+) True G159748
TU216738 other downstream 1296913 22147844 ~ 22152785 (+) True G159926
XR_002651264.1 other downstream 1771908 22622839 ~ 22623307 (+) True LOC111194779
TU217011 other downstream 2002481 22853412 ~ 22854081 (+) True G160134
TU217233 other downstream 3268198 24119129 ~ 24119825 (+) True G160306

Expression Profile