RNA id: XM_007254472.3


Basic Information

Item Value
RNA id XM_007254472.3
length 4235
RNA type mRNA
GC content 0.39
exon number 3
gene id fam174b
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 21060656 ~ 21074573 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CAAAAtatttcttcattattttatgTGAATTATCTAGCTATGAAAGCTGTGATGGTAAGAATTAGAAACCTACAGGCTGGTGTGTGCATGAATCACTCTAAAGGAAGAATGATTCGTTAATAAGTGGACGGTCGTGTCGGACATTCCTGCTGTGGTCCCTCCCGGAACGGATCCGGGTGGGGACATAATCCATCTACGCTTCCTctaagagcacagcacagcccTCCCCTGCATCATCCAGAtctgtgtgcgcgtgtgtgtcgTCTCTTCACACggacacacgcacaaacacctTGCGGGATTTCATTCAGACGCGCTGTAACAGTCAGTGGATCACGGACTCGGACTCGGACCCGGGTGGAGTCTGCTGGGCGCCGGTGGAACGGAGCGGACCGGCTGGGCTCTGATCCAGAAACTATGCGCTACGCTCTCCATATGGTGTCCGTCTGGAGGCTGCCGCTGACCGAGCCTCGCCGCGCGGCTTAACGTTGGGCCGCCTGCGTTCCGAGCGGATCTGACATATAACTACATACATATATCTGATACCGCAGTTTCTGCTGAAGGGCTGGGAGGAAAAACATGAACATGTCGGCGCGTTGTTTCCTGTGGCTGCCCGTGCTGCTGCTGTTCGTGGTGGTCGCGCGACAAGGCGGCGGGATGCCGCTCGCGCCCTCTTCCTCACCGACGACCACCCACATCAACTCCACGGCGCCTGTAACGGAGGAGCGCAACGCGGCGCGGAACGACACGGACGCGGCCGTGGGGTCGCGCATTTCCACCATCCTGAGGGACCTTCCCACCATCAAAAACGTCGTGATTTTCGTCTGTGTTTTGACGACGCTGCTCATCACGTGCCTCGTCGTCAGAGTGTACAGGTCTGGTAAGAAGATCAGAAAAACACGGAAATATGATATCATTACCACTCCCGCAGAGCGCGTGGAGATGGCGCCGTTAAACGAGGAGAACGACGAGGACGACGACTCAACTCTGTTTGATGTCAAATACAGGTGAACTCGCACCAGGAAAGCAACTGCATCACTGGTGTAATGTCTCAGCTCCTTGCATTAATGAAGATTTTTCATCTGAAATGGATTCCTACACCTCTTCGTTCCGGCCATATTGTTGACTTTTTATGTCTCACCAGCATGAATGAGCCATGTCTAATCTTCTGACTGAATTTTAGACCATATCAAAGACTTGTTACTGACTGTTCTACGACTGAGGCCGAGCGGGAGTCTTGGGAGTCTGATCTTCATCAAAGGAatcatcataaaaataaaaaaaaatcagcttttcTCCATGAATTCCAACTTTCACATTCCTGAAAGTTACTAAAATCGGACACATCCTCCTTCCTTCAGGATAGTTCGAGTTGTatgttgtgtgtctgtgagtgtgtgcgcgCATGCAGAGACTAAAGTCAGTCCTAACTGATTATCCGCCCTCTGAATGTCCCAGTTTATTGCACTCTGCTTTTAAAGCTTTGCAGCACAAAATCAGACTCTAATTTGAGCTGGAATGTCTTGTAGTTTTGAAAGTGGTCCAATATTCCTGAAAGACTGCTTAACCTTGTTTGTGTAAGGCCCTTAAAGACTGGATCACAAGCAAACCCAGCTACTTTAATGCACATACTGGactgaacataaactaaacagtaTATCAGAAGTAGAGCTCGGCAGTATGACAGTATATATCGTTACTGTGATGCATTATGTCACTACACAGTATGTATTTGTGAATTTTCATGAATATTATCAGTACTTTTAGACCACTGACCAGCTGCctggtttattataaaaaaaaaagattgcaaCACAGAACAGTATGCAAAATACGGAAGAAAAATCACTGGAGGAGTCACAATTTTTGATATTAGTACTACTggttttctactttttttatttgttatgaCTGATCAGACATCAGTTTTAACAAATATTGTGacatattgtgtattgtgaaaaattcacagtattatatatttttgtcatattgcccatcTCTTATCTAAAAATTCATCCCAATAGAACTTAAAtgaccaaaaatatattttccataATTGAGTaatctaataaatatataactctAAAATTAGGCATATACCTAGCCGAATACATGGTTATAGTTTgttaaatagatgtttattttcTAATAGTGACTTCTGAAAAATTTATTGTtgtctgtaaatactgtataaaataattcctcgaaaatagtttattttaagcaaaatttgataaaatcattaTAAATCTAATAACTAATATATTAACCTCCTAACATTGTAGGTGTCCAACATTGTATATTGAATATCTGTCTGCTAACCATTAACTGTGCGTTTTTACTGTACGACAAATTTGTCACATTTGTAACCTGACGTTGCTAATCTGATTTAgcatttagattttagatttttgtgtAAAAGGGGCTGAGGGCTCCCTGTGTTGCTGCTATGTGTGGTCAGAGATAGATGATTTGGAAGACACTACGTTTCCAGtgcccttatttttaaatacactaaatcATCACGTTTTCATCCATAAGATGTAGGCAACAAAAACGTTTTATTGATTTCAACAaaaacttattattttattattattgtatagcATTCATATAATTGGAGTCAattttgggagaaggaccatgCCCTGAATTTCACCTCCTCATTTCTCAGGACATATAAATCCTCCCATCCTCCTCTGTCGTTTTTACTTCCTTGACAAACAACATCACACCCACTCCGTCCTTCCTTCTTCTATGGATTAATTTCATGTAAGCCCAAATGTTCTGAGTTCACCTCCCTTTTCCAGCATTTGTATGTTACCTGAGAtattagaaaaatgtatttttaaaacacataaaaagtaaaaattgagTTTCACCTTACAGATTTCCTCAGAtactttttacaacaaacagAATTGAGAGTACAGAGTTGGACAAAagacaaaagtgttttttttaaaagaaaaacacatagcTCAAACAGCTCAAATTGTGTGATTagaaaaatgtgatttcttGTGATATGTTTTCACTGTGGGAAAAAATTGTAATGTCCTAACTAGTAGACCAAGTAGCATTCTTTGACTGCTAAACCAAAGCATATTTACCAGGAAATTGCTTGATTatgtaaagtatttattttggtaaaagtttatttgatagaaacaagaaaattagaaaataaattgtatttgaCTTTAATTATTGACAGCAACTCTGCTGAAACCTGCAGGGCACTGGTAATTTAATCATAGCTTAAAAACTGAGTGCGTCAGCATTTTGGATTTGTtgatagctgtagtaattatattttaaacgtGCGGAGCACATCTGATGGTTTGGCTGGCTCGAGTTTAGTTCACTctctcaccacaaacaaaccacTCCAGAGTTTGATTAGGAGCGGACCAGAACAACCTCCTCATGTGGTTGTTTTGGTCCGCACCTGAGTTTgattactgtattcacacctgcccaGATGAATCAGACCAGGAGTGAAAATTGGCCTATCGCAAATTATCATACCATATACGGACATAAGCTTTTATCCTTACTTAAGGAGGAGAGCTCATTAAAGTGAATTGGTCAGTATGTCGGTTTTGTTTAGAagcagtgttttaattttaaatcatatttatttttttatttgaatgattTATATTCCAATTACATTATCTGAAttgtcttaaaatatatttaaaaaagtgagaGTTTTTAATTGCCAGTGTTGACAGAAACACAAGAGGgttcaaaaaaagtttgatcTGTTATTACGTTTTATTGATCATTATTTAATATGCTGTGGGAACTTGTTGCATAATATACTTATTCCAGAGTAAAGGGTGTGAGCACTGGTAACTTTCCCTGGTAAGAAGTGTTTGACTTGCAGGCATGTACACACTGCCCTGTTAGCGAGAAGTGTTATTCCTGTGTACATAATGGGTTGATATTCCAGACATAAATTGGGAGTAGGAGTGACAGAACAGGAAAGCTGCCCTTTCTTCTGTTGTGACTGCAATAAATTATGCTTACAGTATCCCTGAAAACTggagtgttttaaatgttttctcttcagtgtttgatttatgttttggTTGTGGTTTTAAGTGTAAACAGGAAGTACAACTGTGTTACTGTGACTGTCCTGTGAAGACCTTTGTTATGTGAACCAATGACTTTTCTTTATCTTCCAACatcaaaataaacatattagCTGATTTAAAGGA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU216510 lncRNA upstream 168531 20897151 ~ 20897538 (+) True G159744
TU216505 lncRNA upstream 215138 20850354 ~ 20850931 (+) True G159739
TU216500 lncRNA upstream 312815 20752800 ~ 20753254 (+) True G159734
TU216497 lncRNA upstream 313395 20752115 ~ 20752674 (+) True G159731
TU216474 lncRNA upstream 535344 20530473 ~ 20530725 (+) True G159709
TU216548 lncRNA downstream 2646 21077219 ~ 21077425 (+) True G159777
TU216549 lncRNA downstream 6143 21080716 ~ 21081329 (+) True G159778
TU216554 lncRNA downstream 15170 21089743 ~ 21126096 (+) True G159781
TU216566 lncRNA downstream 71700 21146273 ~ 21206671 (+) True G159790
TU216629 lncRNA downstream 361276 21435849 ~ 21443252 (+) True G159836
XM_007254471.3 mRNA upstream 58779 20986624 ~ 21007290 (+) True rgma
XM_015607162.2 mRNA upstream 314273 20745568 ~ 20751796 (+) True lysmd4
XM_007254464.3 mRNA upstream 391842 20666244 ~ 20674227 (+) True arrdc4
XM_007254465.3 mRNA upstream 391842 20666244 ~ 20674227 (+) False arrdc4
XM_022679733.1 mRNA upstream 1218511 19775339 ~ 19847558 (+) True LOC103025942
XM_015607163.2 mRNA downstream 177131 21251704 ~ 21255960 (+) True LOC103034607
XM_007254474.3 mRNA downstream 177131 21251704 ~ 21255960 (+) False LOC103034607
XM_015607165.2 mRNA downstream 177131 21251704 ~ 21255960 (+) False LOC103034607
XM_007254475.2 mRNA downstream 280546 21355119 ~ 21371584 (+) True LOC103034933
XM_007254477.3 mRNA downstream 382783 21457356 ~ 21461379 (+) True pex11a
TU216515 other upstream 54275 21009302 ~ 21011794 (+) True G159748
TU216494 other upstream 329020 20736598 ~ 20737049 (+) True G159728
TU216418 other upstream 879150 20185516 ~ 20186919 (+) True G159666
TU215929 other upstream 2489632 18526386 ~ 18576437 (+) True necab2
TU216738 other downstream 1073271 22147844 ~ 22152785 (+) True G159926
XR_002651264.1 other downstream 1548266 22622839 ~ 22623307 (+) True LOC111194779
TU217011 other downstream 1778839 22853412 ~ 22854081 (+) True G160134
TU217233 other downstream 3044556 24119129 ~ 24119825 (+) True G160306
TU217966 other downstream 5674806 26749379 ~ 26755313 (+) False LOC103021732

Expression Profile