RNA id: TU216667


Basic Information

Item Value
RNA id TU216667
length 363
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G159864
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 21491389 ~ 21491751 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttattcaaggattcaaggattcaaggattcaaggagattttattgtcattcgcatcttatgtggtacatgaggtggaacgaaattgtgatctcacgatccagtttacacccaggagctgttattaaatagatatatagataaaagtacaataaaggaatacaataaaaatagaatatacaaaatagttaaagataaataccccaaatgaaataaatagaaagagtagacaggttgcaacaacaagtccagagtgcaaatgttgctatagcagcatgaaatgaattagagcagtagaaaataaagtgtctcagtgcgggtaaagtgaccgtgtttgtgcagtaattgtccttgtgtgtcagtgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU216629 lncRNA upstream 48137 21435849 ~ 21443252 (+) True G159836
TU216630 lncRNA upstream 48137 21435849 ~ 21443252 (+) False G159836
TU216632 lncRNA upstream 48137 21435849 ~ 21443252 (+) False G159836
TU216566 lncRNA upstream 284718 21146273 ~ 21206671 (+) True G159790
TU216554 lncRNA upstream 365293 21089743 ~ 21126096 (+) True G159781
TU216671 lncRNA downstream 16844 21508595 ~ 21508833 (+) True G159868
TU216698 lncRNA downstream 260754 21752505 ~ 21752999 (+) True G159891
TU216704 lncRNA downstream 355866 21847617 ~ 21850541 (+) True G159896
TU216712 lncRNA downstream 426998 21918749 ~ 21918994 (+) True G159904
TU216731 lncRNA downstream 616324 22108075 ~ 22109190 (+) True G159919
XM_007254477.3 mRNA upstream 30010 21457356 ~ 21461379 (+) True pex11a
XM_007254475.2 mRNA upstream 119805 21355119 ~ 21371584 (+) True LOC103034933
XM_015607163.2 mRNA upstream 235429 21251704 ~ 21255960 (+) True LOC103034607
XM_007254474.3 mRNA upstream 235429 21251704 ~ 21255960 (+) False LOC103034607
XM_015607165.2 mRNA upstream 235429 21251704 ~ 21255960 (+) False LOC103034607
XM_022679979.1 mRNA downstream 140009 21631760 ~ 21699721 (+) True LOC103031832
XM_022679743.1 mRNA downstream 508909 22000660 ~ 22061810 (+) True LOC103025486
XM_007250996.3 mRNA downstream 585727 22077478 ~ 22079758 (+) True LOC103026111
XM_007250997.2 mRNA downstream 589443 22081194 ~ 22084499 (+) True LOC103026427
XM_022679980.1 mRNA downstream 598812 22090563 ~ 22094253 (+) True LOC111194835
TU216515 other upstream 479595 21009302 ~ 21011794 (+) True G159748
TU216494 other upstream 754340 20736598 ~ 20737049 (+) True G159728
TU216418 other upstream 1304470 20185516 ~ 20186919 (+) True G159666
TU215930 other upstream 2914952 18526386 ~ 18576437 (+) False necab2
TU216738 other downstream 656093 22147844 ~ 22152785 (+) True G159926
XR_002651264.1 other downstream 1131088 22622839 ~ 22623307 (+) True LOC111194779
TU217011 other downstream 1361661 22853412 ~ 22854081 (+) True G160134
TU217233 other downstream 2627378 24119129 ~ 24119825 (+) True G160306
TU217966 other downstream 5257628 26749379 ~ 26755313 (+) False LOC103021732

Expression Profile