RNA id: TU216738


Basic Information

Item Value
RNA id TU216738
length 376
RNA type TUCP
GC content 0.49
exon number 3
gene id G159926
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 22147844 ~ 22152785 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTGTGCAGGCGTAGAGTCCTGTCTATCTCTGGAGGCATTGAGGAGTTGGTGAAGGTTAACTGGGAGGTTCTCCTGTGTTTGATTGCAGTGTggattatttgttatttttgtatgtggaaAGGAATTAAATCCTCAGGGAAGGTGGTATATTTCACGGCCACGTTCCCGTATGTGATGCTGCTGGTGTTGCTGGTTCGAGAGTTGACTCTGCCTGGAGCTCTACAGGGAATCGTGTACTACCTCTATCCTGATCCTGAGCGACTGCTGGACCCACAGgtCTGGATGGAGGCAGGTACCCAGGTCTTCTTCTCCTACAGTTCATGTGTGGGTCTATTAACTGTGCTGGGAAGCTGCAACACCTACAATAACAACTGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU216737 lncRNA upstream 20165 22126544 ~ 22127679 (+) True G159925
TU216731 lncRNA upstream 38654 22108075 ~ 22109190 (+) True G159919
TU216712 lncRNA upstream 228850 21918749 ~ 21918994 (+) True G159904
TU216704 lncRNA upstream 297303 21847617 ~ 21850541 (+) True G159896
TU216698 lncRNA upstream 394845 21752505 ~ 21752999 (+) True G159891
TU216758 lncRNA downstream 13136 22165921 ~ 22166376 (+) True G159936
TU216761 lncRNA downstream 25419 22178204 ~ 22178561 (+) True G159939
TU216784 lncRNA downstream 119912 22272697 ~ 22276949 (+) True G159961
TU216857 lncRNA downstream 156120 22308905 ~ 22378490 (+) True G160015
TU216905 lncRNA downstream 407051 22559836 ~ 22561902 (+) True G160051
XM_022679980.1 mRNA upstream 53591 22090563 ~ 22094253 (+) True LOC111194835
XM_007250997.2 mRNA upstream 63345 22081194 ~ 22084499 (+) True LOC103026427
XM_007250996.3 mRNA upstream 68086 22077478 ~ 22079758 (+) True LOC103026111
XM_022679743.1 mRNA upstream 86034 22000660 ~ 22061810 (+) True LOC103025486
XM_022679979.1 mRNA upstream 448123 21631760 ~ 21699721 (+) True LOC103031832
XM_022679747.1 mRNA downstream 52372 22205157 ~ 22233055 (+) False LOC103027502
XM_022679746.1 mRNA downstream 52373 22205158 ~ 22233055 (+) True LOC103027502
XM_022679745.1 mRNA downstream 52373 22205158 ~ 22233055 (+) False LOC103027502
XM_007251016.2 mRNA downstream 81507 22234292 ~ 22260071 (+) True itpkc
XM_007251004.3 mRNA downstream 129909 22282694 ~ 22287641 (+) True snrpa
TU216515 other upstream 1136050 21009302 ~ 21011794 (+) True G159748
TU216494 other upstream 1410795 20736598 ~ 20737049 (+) True G159728
TU216418 other upstream 1960925 20185516 ~ 20186919 (+) True G159666
TU215929 other upstream 3571407 18526386 ~ 18576437 (+) True necab2
XR_002651264.1 other downstream 470054 22622839 ~ 22623307 (+) True LOC111194779
TU217011 other downstream 700627 22853412 ~ 22854081 (+) True G160134
TU217233 other downstream 1966344 24119129 ~ 24119825 (+) True G160306
TU217966 other downstream 4596594 26749379 ~ 26755313 (+) False LOC103021732
TU218064 other downstream 4752459 26905244 ~ 26907627 (+) True G160919

Expression Profile