RNA id: TU216972


Basic Information

Item Value
RNA id TU216972
length 236
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G160098
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 22649831 ~ 22650066 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGGGGTCATTTCCAAGGTGAGCAGCCCTACAGAATGGTGCGCAGGGATGGTCGTGGTTCCAAAGCCAAGTGGGAAGATTCGCATATGTGTAGATCTCACAAACTTGAATAAGTGGGTCAAAAGAGAACGCCACATCCTGCCAGCTGTAGACCAGTCTCTAGCAATGCTGTCAAATGCCAAGGTTTTCACAAAATTGGATGCTAGGTCAGGCTTCTGGCAGATTCCCCTCACAAATG

Function

GO: NA

KEGG:

id description
ko04742 Taste transduction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU216970 lncRNA upstream 912 22648636 ~ 22648919 (+) True G160096
XR_002651265.1 lncRNA upstream 27058 22622346 ~ 22622773 (+) True LOC111194780
TU216895 lncRNA upstream 67660 22576918 ~ 22582171 (+) True G160041
TU216905 lncRNA upstream 87929 22559836 ~ 22561902 (+) True G160051
TU216857 lncRNA upstream 271341 22308905 ~ 22378490 (+) True G160015
TU216981 lncRNA downstream 20050 22670116 ~ 22672904 (+) True G160106
TU216991 lncRNA downstream 71142 22721208 ~ 22721760 (+) True G160115
TU217006 lncRNA downstream 95291 22745357 ~ 22746298 (+) True G160129
TU217025 lncRNA downstream 197325 22847391 ~ 22847763 (+) True G160144
TU217017 lncRNA downstream 207026 22857092 ~ 22860616 (+) True G160137
XM_007251005.3 mRNA upstream 257256 22302354 ~ 22392575 (+) True LOC103028656
XM_007251004.3 mRNA upstream 362190 22282694 ~ 22287641 (+) True snrpa
XM_007251016.2 mRNA upstream 389760 22234292 ~ 22260071 (+) True itpkc
XM_022679746.1 mRNA upstream 416776 22205158 ~ 22233055 (+) True LOC103027502
XM_007235619.3 mRNA downstream 72654 22722720 ~ 22727446 (+) True rnf7
XM_007235620.2 mRNA downstream 78467 22728533 ~ 22736629 (+) True LOC103026853
XM_022679750.1 mRNA downstream 163469 22813535 ~ 22816398 (+) True LOC103027133
XM_007235622.2 mRNA downstream 242406 22892472 ~ 22893301 (+) True LOC103027426
XM_022679757.1 mRNA downstream 410509 23060575 ~ 23094876 (+) True LOC103030816
XR_002651264.1 other upstream 26524 22622839 ~ 22623307 (+) True LOC111194779
TU216738 other upstream 497046 22147844 ~ 22152785 (+) True G159926
TU216515 other upstream 1638037 21009302 ~ 21011794 (+) True G159748
TU216494 other upstream 1912782 20736598 ~ 20737049 (+) True G159728
TU216418 other upstream 2462912 20185516 ~ 20186919 (+) True G159666
TU217011 other downstream 203346 22853412 ~ 22854081 (+) True G160134
TU217233 other downstream 1469063 24119129 ~ 24119825 (+) True G160306
TU217966 other downstream 4099313 26749379 ~ 26755313 (+) False LOC103021732
TU218064 other downstream 4255178 26905244 ~ 26907627 (+) True G160919
XR_002651269.1 other downstream 4459605 27109671 ~ 27117211 (+) False ccnl1

Expression Profile