RNA id: TU217107


Basic Information

Item Value
RNA id TU217107
length 321
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G160212
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 23227414 ~ 23227734 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cactcgcagatgcagtaaaacgggttgtttattaaaatagcaggTAGAAAAAAGGGTAGTCGTACAAACAAAGTTAGAGCACCGGTAAACAGAAGCAACGTAGGGATAACCATACCATGAGTGAGatacagtccagagttcaaacacaagcaggccaacatcagaggtaatccaaaatcgaaaaacgtgaaacagtccaggtcatacacaaaaatatccacaatcagagataatccaaaaaatcggcgtcgagaaaaaacaaaacaaggtcatacacgaagaTAACAGAGACAATAGAGAGTAACGCTTAGTAATGAGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU217052 lncRNA upstream 260823 22965333 ~ 22966591 (+) True G160168
TU217043 lncRNA upstream 279225 22911559 ~ 22948189 (+) True G160160
TU217022 lncRNA upstream 328017 22895055 ~ 22899397 (+) True G160142
TU217017 lncRNA upstream 366798 22857092 ~ 22860616 (+) True G160137
TU217025 lncRNA upstream 379651 22847391 ~ 22847763 (+) True G160144
TU217109 lncRNA downstream 10997 23238731 ~ 23239091 (+) True G160214
TU217113 lncRNA downstream 24343 23252077 ~ 23252817 (+) True G160216
TU217161 lncRNA downstream 634209 23861943 ~ 23915300 (+) True G160253
TU217235 lncRNA downstream 892145 24119879 ~ 24120092 (+) True G160308
TU217241 lncRNA downstream 914664 24142398 ~ 24143111 (+) True G160314
XM_022679757.1 mRNA upstream 132538 23060575 ~ 23094876 (+) True LOC103030816
XM_007235622.2 mRNA upstream 334113 22892472 ~ 22893301 (+) True LOC103027426
XM_022679750.1 mRNA upstream 411016 22813535 ~ 22816398 (+) True LOC103027133
XM_007235620.2 mRNA upstream 490785 22728533 ~ 22736629 (+) True LOC103026853
XM_007235619.3 mRNA upstream 499968 22722720 ~ 22727446 (+) True rnf7
XM_007231092.2 mRNA downstream 150135 23377869 ~ 23673136 (+) True LOC103026225
XM_022679758.1 mRNA downstream 520008 23747742 ~ 23913263 (+) True LOC103025495
XM_022679759.1 mRNA downstream 520008 23747742 ~ 23913263 (+) False LOC103025495
XM_022679760.1 mRNA downstream 520008 23747742 ~ 23913263 (+) False LOC103025495
XM_007231088.3 mRNA downstream 715959 23943693 ~ 23949888 (+) True LOC103024981
TU217011 other upstream 373333 22853412 ~ 22854081 (+) True G160134
XR_002651264.1 other upstream 604107 22622839 ~ 22623307 (+) True LOC111194779
TU216738 other upstream 1074629 22147844 ~ 22152785 (+) True G159926
TU216515 other upstream 2215620 21009302 ~ 21011794 (+) True G159748
TU216494 other upstream 2490365 20736598 ~ 20737049 (+) True G159728
TU217233 other downstream 891395 24119129 ~ 24119825 (+) True G160306
TU217966 other downstream 3521645 26749379 ~ 26755313 (+) False LOC103021732
TU218064 other downstream 3677510 26905244 ~ 26907627 (+) True G160919
XR_002651269.1 other downstream 3881937 27109671 ~ 27117211 (+) False ccnl1
TU218548 other downstream 5394394 28622128 ~ 28624785 (+) True G161292

Expression Profile