RNA id: TU217241


Basic Information

Item Value
RNA id TU217241
length 714
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G160314
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 24142398 ~ 24143111 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AATAGCAGCGTCGATAAGCTGATTTAGTGACAGGTCTTGAGCCCTGAATACTAACTCTGCTTGTAGATCTTCCCGTAATCCCCGCTGAAACATGGTTTTCAGCGCTGGCTCACTCCATCCGCTGCCTGCAGCGAGTGTGCGGAAGTCGAGGGAGTAACTTGCCGCAGAACGGGTGCCCTGTTTTAGTTCGCAAATTTGTAAACCCACCTCTTTTCTGGCTGCAGGGTGGTCAAATACAGCTTTAAACTGAGCTAAAAAGTGCGTCTCTGAAAGTAAGATCTCGCTATTGGCAGACCATAGAGCCGTAGCCCACTCCTTGGCTTTACCGGTGAGCAGTGAAATTACAAAATGAATCTTATCAGTCTCTTGACGGAACTGAGCCGCATTGTGATTAATATATAAAGTACATTGCATTAAAAAGCTCTTACATGTACCCGGAGAGCCGTCATAACGTTCAGGAACAGCAATAAAGACTGAGGAGGAAGGATTGGCAGGAGCACCGGCGTCAGCGGCCTGTTCaggtgcagcagcagcttcagcagcgGAGGGGCTCACACGCTGCACCAAACCCTGAACAAGCTGGACCAATTCTTCCATTTTCTGTTCCTGGCTGGCAATCCGCAGCTCCAAACCTGCTGGGTCCATCCGGGCGACGTCTTATGTTACATAAGACCACGTAAGTAGGATCCAAATGCAGGTTTAATAGCAGAGAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU217235 lncRNA upstream 22306 24119879 ~ 24120092 (+) True G160308
TU217161 lncRNA upstream 227098 23861943 ~ 23915300 (+) True G160253
TU217113 lncRNA upstream 889581 23252077 ~ 23252817 (+) True G160216
TU217109 lncRNA upstream 903307 23238731 ~ 23239091 (+) True G160214
TU217107 lncRNA upstream 914664 23227414 ~ 23227734 (+) True G160212
TU217248 lncRNA downstream 36552 24179663 ~ 24179956 (+) True G160321
TU217262 lncRNA downstream 78690 24221801 ~ 24223581 (+) True G160325
TU217265 lncRNA downstream 109412 24252523 ~ 24255334 (+) True G160328
TU217291 lncRNA downstream 441086 24584197 ~ 24587185 (+) True G160349
TU217298 lncRNA downstream 472595 24615706 ~ 24619083 (+) True G160355
XM_007231088.3 mRNA upstream 192510 23943693 ~ 23949888 (+) True LOC103024981
XM_022679758.1 mRNA upstream 229135 23747742 ~ 23913263 (+) True LOC103025495
XM_022679759.1 mRNA upstream 229135 23747742 ~ 23913263 (+) False LOC103025495
XM_022679760.1 mRNA upstream 229135 23747742 ~ 23913263 (+) False LOC103025495
XM_007231092.2 mRNA upstream 469262 23377869 ~ 23673136 (+) True LOC103026225
XM_022679762.1 mRNA downstream 76748 24219859 ~ 24614929 (+) False nectin1
XM_022679763.1 mRNA downstream 76748 24219859 ~ 24614047 (+) False nectin1
XM_007259531.3 mRNA downstream 76753 24219864 ~ 24403141 (+) True nectin1
XM_007259535.3 mRNA downstream 925800 25068911 ~ 25080426 (+) True cxcr5
XM_007259546.3 mRNA downstream 1340833 25483944 ~ 25500609 (+) True LOC103023437
TU217233 other upstream 22573 24119129 ~ 24119825 (+) True G160306
TU217011 other upstream 1288317 22853412 ~ 22854081 (+) True G160134
XR_002651264.1 other upstream 1519091 22622839 ~ 22623307 (+) True LOC111194779
TU216738 other upstream 1989613 22147844 ~ 22152785 (+) True G159926
TU216515 other upstream 3130604 21009302 ~ 21011794 (+) True G159748
TU217966 other downstream 2606268 26749379 ~ 26755313 (+) False LOC103021732
TU218064 other downstream 2762133 26905244 ~ 26907627 (+) True G160919
XR_002651269.1 other downstream 2966560 27109671 ~ 27117211 (+) False ccnl1
TU218548 other downstream 4479017 28622128 ~ 28624785 (+) True G161292
XR_002651275.1 other downstream 4602585 28745696 ~ 28759007 (+) False fam219b

Expression Profile