RNA id: TU217262


Basic Information

Item Value
RNA id TU217262
length 1374
lncRNA type intronic
GC content 0.40
exon number 2
gene id G160325
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 24221801 ~ 24223581 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aataaataaacattaagttCTGCATTCAGTATTTAGTCTTTGTCTGAATGTTTAATTTAGCTCAGTTCTAGTTCCATTTCAGTGTATCCCTGACTAATACTTATTAATGTTTGAGTATATAAAATGTAGTATAAATTGTAGTGTCAAGAAGTTGAGTATACTTAATTATTCTCAATCATGCACTCATACACAAAAACATTGAGTTATTGAGTGTGGTTATGACACTTATGTAGGACACTtttatcccacaatgcaatgtgcAAAGGAGAGGGATGAGCTATTCGCACCTGGAATTTTTACCTTTATTAGTAAAAAAtagatgataatgatgatgcaAGGGCATCATCACTTACGGTGTACTATCCTGCCCATCCTGCAatatttCAATACAGGTTCTGTCAAAACAATGTAATTCTGATATAAACTAGTATTTTTGTCTTTAACGCAATGCTTCAATGCTTCAATCTtaaaacagcagcagtatgtggacaagcattgtcctgctgaccAAGAATGCCCACAATGGATATGATATCTGTACCTACAGACTTCAGACAACTCATGTAATGCACCTTGTAATAACTGACAATTTAGTGACTAAGGCTTCTTAGTCACCTTTATTGAAACCTTATTATGTATTGAATTATTGACCAGCTCTAATTTCTGCACATCCAGCTTCTTATGAAAGATAAATGAGCAGTACTGTAAAGTAAACGTGTGGTAGATGCACCCTTGCACTTGCCCCCGCTCTGAGAATTTATCAGCACCTCCAGGCCCCTCGGGTCCACTCTCGGCCGTCTTTTAATAAACTGCTGTTTGAAAGTACATTTCCCAATCAATAGCGCCCTGCTGACCTCTAATGTTGTAAACAAACAGAGTGATGTGAAGCCCAGCTCCCGGGCCCGAGCGGACCTGCCCCCAGCGGCTCGGTCTAATGAGCCCAGCCAGCGCAGACAGCTGCGCCGGGTCAAACGGGAGAATGCGGACGTGATGGCGAGCGCATCTGCTTTTACGGACGGCAGTGCGCTCGTTTTTCACCTCCATTGATTTCTCTTCCCACCTTTCTTTGACCTTGGCTGCTGGGTTTCGTCACGGCCAAATAAACGCGAAACAGTAAAGGAATGCTGATCTCATTAAAACACCATTGATGGTTTTTTGaacagtttttcttttctttttttggggtTGTTGGGCAGTGACATACTTGTGTTTGAACCTTGGCTATCAAAGCTAAATCTTTACGtatctatttaaaaagtgaaagaaatcTATTCATTATGAAAGATGACAGATAACGACGAATGAGTGACTTTCGTGGTCCAAACCTTTATTTTAGTCTATAGCCTATAGTCTAAGAGGTGCttcacatctaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU217248 lncRNA upstream 41845 24179663 ~ 24179956 (+) True G160321
TU217241 lncRNA upstream 78690 24142398 ~ 24143111 (+) True G160314
TU217235 lncRNA upstream 101709 24119879 ~ 24120092 (+) True G160308
TU217161 lncRNA upstream 306501 23861943 ~ 23915300 (+) True G160253
TU217113 lncRNA upstream 968984 23252077 ~ 23252817 (+) True G160216
TU217265 lncRNA downstream 28942 24252523 ~ 24255334 (+) True G160328
TU217291 lncRNA downstream 360616 24584197 ~ 24587185 (+) True G160349
TU217298 lncRNA downstream 392125 24615706 ~ 24619083 (+) True G160355
TU217299 lncRNA downstream 393310 24616891 ~ 24619513 (+) False G160355
TU217300 lncRNA downstream 403861 24627442 ~ 24627919 (+) True G160356
XM_007231088.3 mRNA upstream 271913 23943693 ~ 23949888 (+) True LOC103024981
XM_022679758.1 mRNA upstream 308538 23747742 ~ 23913263 (+) True LOC103025495
XM_022679759.1 mRNA upstream 308538 23747742 ~ 23913263 (+) False LOC103025495
XM_022679760.1 mRNA upstream 308538 23747742 ~ 23913263 (+) False LOC103025495
XM_007231092.2 mRNA upstream 548665 23377869 ~ 23673136 (+) True LOC103026225
XM_007259535.3 mRNA downstream 845330 25068911 ~ 25080426 (+) True cxcr5
XM_007259546.3 mRNA downstream 1260363 25483944 ~ 25500609 (+) True LOC103023437
XM_022679770.1 mRNA downstream 1280496 25504077 ~ 25510167 (+) True LOC103024914
XM_022679768.1 mRNA downstream 1286742 25510323 ~ 25521145 (+) True dhx34
XM_007235657.3 mRNA downstream 1325847 25549428 ~ 25564612 (+) True bicra
TU217233 other upstream 101976 24119129 ~ 24119825 (+) True G160306
TU217011 other upstream 1367720 22853412 ~ 22854081 (+) True G160134
XR_002651264.1 other upstream 1598494 22622839 ~ 22623307 (+) True LOC111194779
TU216738 other upstream 2069016 22147844 ~ 22152785 (+) True G159926
TU216515 other upstream 3210007 21009302 ~ 21011794 (+) True G159748
TU217966 other downstream 2525798 26749379 ~ 26755313 (+) False LOC103021732
TU218064 other downstream 2681663 26905244 ~ 26907627 (+) True G160919
XR_002651269.1 other downstream 2886090 27109671 ~ 27117211 (+) False ccnl1
TU218548 other downstream 4398547 28622128 ~ 28624785 (+) True G161292
XR_002651275.1 other downstream 4522115 28745696 ~ 28759007 (+) False fam219b

Expression Profile