RNA id: TU217332


Basic Information

Item Value
RNA id TU217332
length 1480
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G160384
representative False

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 25046937 ~ 25048578 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cacatttttattttactaataaaGCTTCACTGCCAAAATGTGCCAattcaaaaagaacaaaaaaaaaaaaagccaaacagTCAAATTCTTGCATCGTGAACAGAATATTGACATTCAtctcaatgaaaaacaaaaagaaaacatcagGGCACAGGTTTTACAACTGATTTTCCTTCCCCAGTTACTCCGAATTTGTGGCTTTTAaaggtttcatttttttttttcttttaaacttaCTTTTCTTGGTTTCCCCAAAGTGTGAACCCACCCAAACTCAGCCCTCCCCAGCTGATGCATCTTATCCACATTCTTACTTTCCAAACACTGGCATCTATACCATCCAGGCTGGCTTTAGACCTGCTGTAGAGCAGACAGGGGTGATCACGGGCATCTCCTGAGCTGTAAGGCTgaagaacaaacaaacagcaccaTCAACTTCATAACAGTAGCCCCTCCCTGCTCTACAGCGAAGACGTGGAAAGATGCATCAGAGCAGCAGATCAGCACCCACCCACaaaacccacccacccacaacagaaaaacaaaaataataaataacccCTGAAGACTGAGATTGAGATCTTTTCACAAGAGTGacttttttaaaatccattttttaacAATCCAATTGAATATGGTGAGACAGTCTCAAGCTCAAtcttcaaaaaacaaaaaaataagccttAAATCTTCATTAGTTCACAGCCTTTACTTTCAGTATACACTTGGTCTTAATGGCATATGGTGATAGTGCACGCCAATGTGTATGAAAAAGAAAAGGCCATGTTCTCAATAAAAgtaggaaaaaataattaaagaaaaataacaaaaaaaaaaaggcaagctGCCAAATGCCTTGTTTAACACACATCCTCTCTCCTAGAGTCACATAAACCCCCTcagtatttatgtttttaataaagagtaaaataaacaaccCCACCCATTCCTCCACCCAAGAAATAGGTAAAAGGAGTAAAAAACGTCAATCTAATTAATAAAAGGAGGTCTATGTGCACAATATTTGGGCCACTGTAGGAGAAAGGATGAATGTCTAAGTTCAAACCTACTCTACCATCTGGTGCTGCAACTTAAATACAATTAccacctttaaaataaaacaccaagactttaagactttctTGTTTTGTCCTCACTTCAATTTATCCAATGAATCATCACTATCATTTTAGATGGGAAACCCCTTTCAAGTCACAAGTTGCACAGGTGCAACACCAATAGGTAGAGCAGGCAGAAccacaaatatatgtatatgtatgtctcGCCTAAAGTGACAAAATTATCAGGGGGCTCCTAAGACAATGCTGTGTCATGAATACGTTGAGCACATTAACTGTGCTGTACAAATAATGGCACAAACAAAGGCAATGGAGTGAACAAATACAATCGAATAAATAATACCaccatataatataaatatcccACCcctcccacaaaaaaaaaaatcccaaatttccct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU217328 lncRNA upstream 185 25046714 ~ 25046914 (+) True G160383
TU217313 lncRNA upstream 139544 24907229 ~ 24907555 (+) True G160369
TU217312 lncRNA upstream 183106 24863245 ~ 24863993 (+) True G160368
TU217300 lncRNA upstream 419180 24627442 ~ 24627919 (+) True G160356
TU217299 lncRNA upstream 427586 24616891 ~ 24619513 (+) False G160355
TU217493 lncRNA downstream 274825 25323403 ~ 25380493 (+) True G160518
TU217527 lncRNA downstream 369065 25417643 ~ 25419939 (+) True G160543
TU217588 lncRNA downstream 491831 25540409 ~ 25546750 (+) True G160576
TU217655 lncRNA downstream 546374 25594952 ~ 25596119 (+) False G160617
TU217654 lncRNA downstream 547134 25595712 ~ 25599301 (+) True G160617
XM_022679762.1 mRNA upstream 432170 24219859 ~ 24614929 (+) False nectin1
XM_022679763.1 mRNA upstream 433052 24219859 ~ 24614047 (+) False nectin1
XM_007259531.3 mRNA upstream 643958 24219864 ~ 24403141 (+) True nectin1
XM_007231088.3 mRNA upstream 1097211 23943693 ~ 23949888 (+) True LOC103024981
XM_022679758.1 mRNA upstream 1133836 23747742 ~ 23913263 (+) True LOC103025495
XM_007259535.3 mRNA downstream 20333 25068911 ~ 25080426 (+) True cxcr5
XM_007259546.3 mRNA downstream 435366 25483944 ~ 25500609 (+) True LOC103023437
XM_022679770.1 mRNA downstream 455499 25504077 ~ 25510167 (+) True LOC103024914
XM_022679768.1 mRNA downstream 461745 25510323 ~ 25521145 (+) True dhx34
XM_007235657.3 mRNA downstream 500850 25549428 ~ 25564612 (+) True bicra
TU217233 other upstream 927274 24119129 ~ 24119825 (+) True G160306
TU217011 other upstream 2193018 22853412 ~ 22854081 (+) True G160134
XR_002651264.1 other upstream 2423792 22622839 ~ 22623307 (+) True LOC111194779
TU216738 other upstream 2894314 22147844 ~ 22152785 (+) True G159926
TU216515 other upstream 4035305 21009302 ~ 21011794 (+) True G159748
TU217966 other downstream 1700801 26749379 ~ 26755313 (+) False LOC103021732
TU218064 other downstream 1856666 26905244 ~ 26907627 (+) True G160919
XR_002651269.1 other downstream 2061093 27109671 ~ 27117211 (+) False ccnl1
TU218548 other downstream 3573550 28622128 ~ 28624785 (+) True G161292
XR_002651275.1 other downstream 3697118 28745696 ~ 28759007 (+) False fam219b

Expression Profile