RNA id: TU217527


Basic Information

Item Value
RNA id TU217527
length 2273
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G160543
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 25417643 ~ 25419939 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTATTTATGGAAGTAGTGAGTTTATTGATGTGTTTCCCGCTTGTAACCATAAAGCCATTTCCATAGGAGtcaatcatattttactactaATATATGCATCTGATATTAGTCTCCCTCGCCCCTCCTCCCCATCCCATAATCCAGCAGGCAGTTACAGGGTTCAGATCGAAGCCGTTCGGGTGCATAGTGAGACAGTCACGTACAGAAATACTGTCACAGGAAGaggaaagaaatagaaaaacaacttaaaaatatatatatcatatcatatcatatatcgtATCGTTTTATATAGAAGAACAAAGCACACCACAGGTCGTCCTCCAGAGAAGTCATGATTGCAACATCAACTATACAGGCATTACAAAGACGCTACTTAAGAACCAAATAAACCCGATGATTGGatgctgatttttattttagttttttttatgtcttggAGTGAAGATACAAGAGTTTTGCACTCGGAGTGACGTTCCTAATCCCCGTGCCCCGCCCTGCCCTGACTCCAGCTCACACCTTCCGCTGGGGTTCCAGTTCCGTCCTCACTCTCACTGGGTTTAACCATCGCCTGACTGGTTGTGCAAAATGCTGCCAGTGTGTATACCACCCTACAGCAGGACTAAATGCCAACCTGGGCACAGCCACGGGTTCAGCTAATCAATAGGAAATAATCGACTGGAAATCTGAAATATTTAGTTCAATTATGGGATCAAATTATCCTAGtcacttgtgtgtgtgcgtgtataaatgtgtgtaatgttggtatataaatgtgtgtgtgtgtgtgtatgtgtgtgtctgtagggACATTAACATTCAGTTTATAATAAGGTATTATTAACTATCTGCCTCGATCCAACCAGTAACCACAATCTTAAATCAGGGCTCAGTTTAATTCATCCAAATAAATAAGACCATCACCAGAACACACCAGCTGATGTAATTTAGAGCTGTACAATATGTTGTTTCAGCATCATCGCAATgtcaaattacagtttataatttctttaaacaaaaaaaagtgtgccaaagttttatttgagaaaaaaaaaacatatagcaAATTAAAGCTTAAATCAtgttataacttttttttgctgcataaaacaaaagaaaagaaaaccttACTGTTCTCAATTTTGTAACAATACCTACCAGAGACAAATTATatcaaattttgtaattttgcaatctgcagTGTATAGAGCACATACTTCATGTGATGTTGACCCTCAGTTTTAATCAATAATATGCAGTCTTGCTGTTGTATCAGAACATTCTGAGGTCCCAGCCTCAAATCATCATCAGCCAATCCAAACATGCCATTGATCCACCTCTGCCATTCAGGTGACAGCATTATACATTTGGACCAATCAAACTCCACCCCTTAATCTCAAAGCTTTAAACTATTGACCCAGGAAGTTCTGACGTCCTGGAAACTCGACCCTAACAGGAAATAGAACATCtactttatattcatatatttttagcattttctgtaataataaacattagaaAGTAAATGAATAATTTCACCAGTTTGATCATATGTTCTCGGTTTGATTCACTATACAGGTAAAGGTTGATACAAAGAACCTTCATATACAAGCAGAAATctattaaaaagaaacaaaaaaaaacgataaaagcaacaggaaaaaaaaaacaggattaaaagAATCGGAAGCATCTCTGTTCTGATTGTTAAActcattctgtgttttttgtatgatttatgATGCATTCCTGAATCTGAATCTtgcttccaaaaaaaataaacataaaaaaagaactttaaaataattacatgttTAAAATCTCATGTACTGATGGACTGATAATTGATTTTGGAATcatattttcatgtttaacagttTGAAACGCTGTATTTAAGAGTAATAACGGAAACGAGCGAAAAGTGCTGCATGGaacagcagtagcagtagtagaagtagtagcagAATTAAACGATTTCTGTTTGATATCGAACCAGAATATGCACCTCTGATACATGAAATGATTTGAAGAGAGCAGTTTGATTATTGGTCAGTAGTACGTTCACCGTGCTGTGGCCCCGCAGGGTCCCCTGGTGGCCCGTGCTAGATCTGCATCTGCTCCAGGTATTTGTAGGTGGGGTTCTCGTAGCCGTGGTTCTGCATCTTGCTCAGGTGACGCTCCTCTGGGCTCAGCATGGGATCCACCTATCAAATGACGGCTCATTAGCATTTTACAGCATATGGTTTAATCTGTATGCATCACATTtgtgtgcg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU217493 lncRNA upstream 37150 25323403 ~ 25380493 (+) True G160518
TU217332 lncRNA upstream 369065 25047099 ~ 25048578 (+) False G160384
TU217329 lncRNA upstream 369107 25046937 ~ 25048536 (+) True G160384
TU217331 lncRNA upstream 369107 25047099 ~ 25048536 (+) False G160384
TU217330 lncRNA upstream 370053 25047099 ~ 25047590 (+) False G160384
TU217588 lncRNA downstream 120470 25540409 ~ 25546750 (+) True G160576
TU217655 lncRNA downstream 175013 25594952 ~ 25596119 (+) False G160617
TU217654 lncRNA downstream 175773 25595712 ~ 25599301 (+) True G160617
TU217651 lncRNA downstream 191777 25611716 ~ 25613928 (+) False G160616
TU217652 lncRNA downstream 193647 25613586 ~ 25615298 (+) True G160616
XM_007259535.3 mRNA upstream 337217 25068911 ~ 25080426 (+) True cxcr5
XM_022679762.1 mRNA upstream 802714 24219859 ~ 24614929 (+) False nectin1
XM_022679763.1 mRNA upstream 803596 24219859 ~ 24614047 (+) False nectin1
XM_007259531.3 mRNA upstream 1014502 24219864 ~ 24403141 (+) True nectin1
XM_007231088.3 mRNA upstream 1467755 23943693 ~ 23949888 (+) True LOC103024981
XM_007259546.3 mRNA downstream 64005 25483944 ~ 25500609 (+) True LOC103023437
XM_022679770.1 mRNA downstream 84138 25504077 ~ 25510167 (+) True LOC103024914
XM_022679768.1 mRNA downstream 90384 25510323 ~ 25521145 (+) True dhx34
XM_007235657.3 mRNA downstream 129489 25549428 ~ 25564612 (+) True bicra
XM_007235656.3 mRNA downstream 130443 25550382 ~ 25564612 (+) False bicra
TU217233 other upstream 1297818 24119129 ~ 24119825 (+) True G160306
TU217011 other upstream 2563562 22853412 ~ 22854081 (+) True G160134
XR_002651264.1 other upstream 2794336 22622839 ~ 22623307 (+) True LOC111194779
TU216738 other upstream 3264858 22147844 ~ 22152785 (+) True G159926
TU216515 other upstream 4405849 21009302 ~ 21011794 (+) True G159748
TU217966 other downstream 1329440 26749379 ~ 26755313 (+) False LOC103021732
TU218064 other downstream 1485305 26905244 ~ 26907627 (+) True G160919
XR_002651269.1 other downstream 1689732 27109671 ~ 27117211 (+) False ccnl1
TU218548 other downstream 3202189 28622128 ~ 28624785 (+) True G161292
XR_002651275.1 other downstream 3325757 28745696 ~ 28759007 (+) False fam219b

Expression Profile