RNA id: TU217854


Basic Information

Item Value
RNA id TU217854
length 242
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G160755
representative True

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 26084594 ~ 26084835 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTGGTttagatcattgtcctgctgcagaacccaactGCTTCGGAGCTTTAGATCACAAACTGATGGATTTTCTGACAGTGAGCAGAATTCATTATCCCATTAATTACAGCAAGTCATTTGGGCGTCAGAAGAAAAGCAACTTCAGACCTtctacactaccaccaccatgcttggcTGATGTTTGCAAGTGAAGACAATCCATTTcattctttttggtcagcagtggtttGAGCCTAtcaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU217845 lncRNA upstream 90623 25993720 ~ 25993971 (+) True G160746
TU217831 lncRNA upstream 137587 25946795 ~ 25947007 (+) True G160732
XR_002651266.1 lncRNA upstream 241657 25838438 ~ 25842937 (+) True LOC111194781
TU217727 lncRNA upstream 345233 25738787 ~ 25739361 (+) True G160654
TU217720 lncRNA upstream 378342 25704517 ~ 25706252 (+) True G160647
TU217918 lncRNA downstream 257493 26342328 ~ 26345682 (+) False LOC103037315
TU217921 lncRNA downstream 262802 26347637 ~ 26349594 (+) True G160803
TU217922 lncRNA downstream 262959 26347794 ~ 26349295 (+) False G160803
TU217925 lncRNA downstream 279269 26364104 ~ 26364360 (+) True G160804
TU217926 lncRNA downstream 284814 26369649 ~ 26369877 (+) True G160805
XM_007254485.3 mRNA upstream 21280 26046342 ~ 26063314 (+) True idh2
XM_007254489.3 mRNA upstream 47894 26029799 ~ 26036700 (+) True ankrd34c
XM_015602012.2 mRNA upstream 220571 25845616 ~ 25864023 (+) False blm
XM_007235677.3 mRNA upstream 220916 25845616 ~ 25863678 (+) True blm
XM_007235678.3 mRNA upstream 220916 25845616 ~ 25863678 (+) False blm
XM_007254480.3 mRNA downstream 109147 26193982 ~ 26318388 (+) True sema4b
XM_022679784.1 mRNA downstream 238985 26323820 ~ 26342602 (+) False LOC103037315
XM_022679783.1 mRNA downstream 238997 26323832 ~ 26342602 (+) True LOC103037315
XM_007254483.3 mRNA downstream 238998 26323833 ~ 26342602 (+) False LOC103037315
XM_022679785.1 mRNA downstream 532427 26617262 ~ 26750698 (+) True LOC103021732
TU217233 other upstream 1964769 24119129 ~ 24119825 (+) True G160306
TU217011 other upstream 3230513 22853412 ~ 22854081 (+) True G160134
XR_002651264.1 other upstream 3461287 22622839 ~ 22623307 (+) True LOC111194779
TU216738 other upstream 3931809 22147844 ~ 22152785 (+) True G159926
TU216515 other upstream 5072800 21009302 ~ 21011794 (+) True G159748
TU217966 other downstream 664544 26749379 ~ 26755313 (+) False LOC103021732
TU218064 other downstream 820409 26905244 ~ 26907627 (+) True G160919
XR_002651269.1 other downstream 1024836 27109671 ~ 27117211 (+) False ccnl1
TU218548 other downstream 2537293 28622128 ~ 28624785 (+) True G161292
XR_002651275.1 other downstream 2660861 28745696 ~ 28759007 (+) False fam219b

Expression Profile