RNA id: TU217918



Basic Information


Item Value
RNA id TU217918
length 1160
lncRNA type sense_over
GC content 0.38
exon number 3
gene id LOC103037315
representative False

Chromosome Information


Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 26323820 ~ 26345682 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


GTTTTTAGTAGAAACACTGAAGGAACCTGGTTTATGTAATTGAAACTAGACAGTTAATCACAGTAGTGTTAAGTGTTCAAAACACAAATTGACCATAATCAAATACCAGTAAGTAATTACAGCCTTAAGCATGCCAGACCTTTAACCATTCTGTCAACACTAcagttacattttaattatgtgctcattgtaaaattaattttgaAAGATTTGTGCAATGGCTAATCTGCAGAACCACaggtttagattaaaaaaaaaaaaaaaaaaaaaaaaaacaccatccgAACAAGTTTATCTACAGATATCAATACCCAATTCATAATTCTATATAGCACTGCAGGCCACATTATTCAACCACTCATACTGAGTTCAAAGAGGATAAACAAAGTTTCCATTTAGAAGAAGCACCAAACAGGTTTAACTGGCATCCAAATGTGTCTCAAGCTGACATCTTTGTATCACTAACAGTATACCGTATActcaaaaaccaaaaacaaacttGTCTGAGCTTAAGAGCTAAAATTTATTCAGTAACTTTGAGTAAAGGTGAAGGGGGATGgggtataaaaaatacaagattgtGGTTCTGAGCAGTCTGTAATTCttgctttttttacattgtaaatactGATCAAGAAAAGTGAGACTTGCACGCTGCGGAGAAGCAAAGAACCCAATTCTCATTCGAAATGATTCGTCTTTCTAAAgctatacaatataaaatgtcCTGAAAGAAAGCATACATAAACATTTTGTAGGCTGGAAACtagaacacaaaaaaagaatccCAATGGAGCCTAATAACACCAATGACAACATTTACTGGAGGATCATATTTGTATGAAGGGCTTCCTTCTGGTTCTTCGGAGGCTACTTGGATTTTGTGTCAGATTTTTCATTGGACTTCTTTTGTTTCTGTTGCATTATCTCAGCATCCCTCTGCTTCCTGGCAGCAGCAGACAAACCATCCTCATTTCTTTTGCCCTTGGACTGGTCAGTTTGCTTTTTGGCATTTTTCTGGCGGGCAAGCTCACGCTGATTTCCccTCGTCATTGTATCGCTTCCTCTCGTTTCCAGATAAGCTCACCCAAAGGGCcgctttcttttcttctccccACCGAGAACCGTTCGCTTTCCAGTCGCTCGTCTCTTCTAGGGAC

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU217854 lncRNA upstream 257493 26084594 ~ 26084835 (+) True G160755
TU217845 lncRNA upstream 348357 25993720 ~ 25993971 (+) True G160746
TU217831 lncRNA upstream 395321 25946795 ~ 25947007 (+) True G160732
XR_002651266.1 lncRNA upstream 499391 25838438 ~ 25842937 (+) True LOC111194781
TU217727 lncRNA upstream 602967 25738787 ~ 25739361 (+) True G160654
TU217921 lncRNA downstream 1955 26347637 ~ 26349594 (+) True G160803
TU217922 lncRNA downstream 2112 26347794 ~ 26349295 (+) False G160803
TU217925 lncRNA downstream 18422 26364104 ~ 26364360 (+) True G160804
TU217926 lncRNA downstream 23967 26369649 ~ 26369877 (+) True G160805
TU217927 lncRNA downstream 24540 26370222 ~ 26370440 (+) True G160806
XM_007254480.3 mRNA upstream 23940 26193982 ~ 26318388 (+) True sema4b
XM_007254485.3 mRNA upstream 279014 26046342 ~ 26063314 (+) True idh2
XM_007254489.3 mRNA upstream 305628 26029799 ~ 26036700 (+) True ankrd34c
XM_007235677.3 mRNA upstream 478650 25845616 ~ 25863678 (+) True blm
XM_022679785.1 mRNA downstream 271580 26617262 ~ 26750698 (+) True LOC103021732
XM_022679786.1 mRNA downstream 410900 26756582 ~ 26789753 (+) True LOC103030887
XM_022679788.1 mRNA downstream 508198 26853880 ~ 27052199 (+) True veph1
XM_022679789.1 mRNA downstream 518877 26864559 ~ 27052199 (+) False veph1
XM_022679791.1 mRNA downstream 743193 27088875 ~ 27103594 (+) False LOC103022175
TU217233 other upstream 2222503 24119129 ~ 24119825 (+) True G160306
TU217011 other upstream 3488247 22853412 ~ 22854081 (+) True G160134
XR_002651264.1 other upstream 3719021 22622839 ~ 22623307 (+) True LOC111194779
TU216738 other upstream 4189543 22147844 ~ 22152785 (+) True G159926
TU216515 other upstream 5330534 21009302 ~ 21011794 (+) True G159748
TU217966 other downstream 403697 26749379 ~ 26755313 (+) False LOC103021732
TU218064 other downstream 559562 26905244 ~ 26907627 (+) True G160919
XR_002651269.1 other downstream 763989 27109671 ~ 27117211 (+) False ccnl1
TU218548 other downstream 2276446 28622128 ~ 28624785 (+) True G161292
XR_002651275.1 other downstream 2400014 28745696 ~ 28759007 (+) False fam219b

Expression Profile


TU217918 Expression in all Baseline Samples

Bar chart with 16 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 30.
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TU217918 Expression in each Bioproject

Bar chart with 7 bars.
TU217918 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 350.
End of interactive chart.